BAC Information

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BAC

Clone NameMSMg01-480G15
Chromosome10 (Build37)
Map Location 38,842,519 - 38,843,108
singlet/doubletsinglet
Overlap gene1700025K23Rik
Upstream geneLOC100040915, Lama4
Downstream geneTube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480G15.T7 (MSMg01no480_g15.b1)MSMg01-480G15.TJ (MSMg01no480_g15.g1)
ACCAG561062AG561063
length709712
length of high quality
(start - end)
583 (79 - 661)151 (331 - 481)
definitionCHROMAT_FILE: MSMg01no480_g15.b1 PHD_FILE: MSMg01no480_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:42 2005CHROMAT_FILE: MSMg01no480_g15.g1 PHD_FILE: MSMg01no480_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATACCGGGGC
GCNGGAATCTTCCATTGCAAAAACAGGCTTCTTCTTTTTTTAATGTAATC
TTTTGTTTTTTAGATTTATTTATTTATTTTTATGTATGTGAGTACACTGT
TACTGTCTTCAGACACATCAGAAGAGGGCATCAGATCCCAATACAGATGG
TTGTGAGCCACCTTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAT
ATCAGTCAGTGCTCTTAAATGCTAAGCCATCTCTCCAGCCCCCCGGATAT
TTCTGGTAATGCCTGCTTCATCNCTTTTTCCTGTTTCATCCAGACAGCCT
TGACATGCCCAAATGGAAGGGATGAGAGTTGTGAAAAGAGGACTACATTT
TGTCCACTCTTGCTATTCTAATTCCTTGTCCTAGAGTGTGTCTGTTGCTG
ATCCTATCTTTAGGACTCTCTTATCACCAGTCCTGGGCTTCTGTAGCCTC
TGCTTGCTTCACTCAAGGTCTGCCCTACTTTGTAGTGCTCTTAGTTTAAC
CCATACTCCAGACTACAATAATCTTCAACTAACAACCTGTTCAGTTTTCA
TAGCTAACAACTAAGTGTTGAATGCTAGTGAGAATTTTTAACTTTATGAA
AGTCTTTGCAACTACACATTATACTCAGGTCCTACTGTTGTGCTTCAAAA
CTTGNGCTN
NGAAGGCAAGAAAGGGGGAGGCCTGGGGGGAGGCTGGTTTCCGACGTAGA
GGNNGAANANAGAAGTACCAACAAAGAGGGGCAACNGGGNGAGAAGCACC
AAAAGAAAGGNNCAACACCCTTAGCCACCAAGGAAAGGCAAANCAAAACA
ACTCTGAGACNCCACCTCACACCAGGCAGAAGGGCNAAAANCAAAAACNC
AGGCGACAGAAGAAGCTGGCAAGAACGCGGAGGAAGAGGAACACACCCCC
ATTATTGTTGGGATTGCCAGCTGGTACAACCACTCTGGAAATCAGTTTGG
AGGTTCCTCAGAAAATTGGTTTTTTTATTACCAGAAGATCCAGCAATACC
ACTCCCGGGCATATTCCCAGAAGATGCTCCAAACTGTAATAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAGCGTTGTACAT
TTATACAAGGGAGTACTATTCATCTATTAAAAACAATGAATTCATGAAAT
TCTTAAGCAAATAGATGGAGCTACAAAATATCATCCCTGAGTGAGGTAAG
TAATCCCAGCCTGAAAGAACACACATTCCAATTTCAATTTTCTCCTTTTT
TTTCTTTTTTATTTAGATATTCCGGTAATTTACATTTTCAAATGTTATCC
CCCTTTCCCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_g15.b1 MSMg01no480_g15.b1 CHROMAT_FILE:
MSMg01no480_g15.b1 PHD_FILE: MSMg01no480_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:42 2005
         (583 letters)



>mm_chr10_38842326_38843308
          Length = 983

 Score = 1038 bits (537), Expect = 0.0
 Identities = 574/590 (97%), Gaps = 7/590 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttctttttttaatgtaatcttttgttttttagatttatttatttatttttatgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ttcttctttttttaatgtaatcttttgttttttagatttatttatttatttttatgtatg 253

                                                                       
Query: 61  tgagtacactgttactgtcttcagacacatcagaagagggcatcagatcccaatacagat 120
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 tgagtacactgttgctgtcttcagacacaccagaagagggcatcagatcccaatacagat 313

                                                                       
Query: 121 ggttgtgagccaccttgtggttgctgggaattgaactcaggacctctggaata----tca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||
Sbjct: 314 ggttgtgagccaccttgtggttgctgggaattgaactcaggacctctggaagagcagtca 373

                                                                       
Query: 177 gt---cagtgctcttaaatgctaagccatctctccagccccccggatatttctggtaatg 233
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtggtcagtgctcttaaatgctaagccatctctccagccccccggatatttctggtaatg 433

                                                                       
Query: 234 cctgcttcatcnctttttcctgtttcatccagacagccttgacatgcccaaatggaaggg 293
           |||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctgcaccacctctttttcctgtttcatccagacagccttgacatgcccaaatggaaggg 493

                                                                       
Query: 294 atgagagttgtgaaaagaggactacattttgtccactcttgctattctaattccttgtcc 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atgagagttgtgaaaagaggactacattttgtccactcttgctattctaattccttgtcc 553

                                                                       
Query: 354 tagagtgtgtctgttgctgatcctatctttaggactctcttatcaccagtcctgggcttc 413
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 554 tagagtgtgtctgttgctgatccaatctttaggactctcttaccaccagtcctgggcttc 613

                                                                       
Query: 414 tgtagcctctgcttgcttcactcaaggtctgccctactttgtagtgctcttagtttaacc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgtagcctctgcttgcttcactcaaggtctgccctactttgtagtgctcttagtttaacc 673

                                                                       
Query: 474 catactccagactacaataatcttcaactaacaacctgttcagttttcatagctaacaac 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 catactccagactacaataatcttcaactaacaacctgttcagttttcatagctaacaac 733

                                                             
Query: 534 taagtgttgaatgctagtgagaatttttaactttatgaaagtctttgcaa 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 taagtgttgaatgctagtgagaatttttaactttatgaaagtctttgcaa 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)