BAC Information

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BAC

Clone NameMSMg01-480L12
Chromosome10 (Build37)
Map Location 118,684,018 - 118,862,337
singlet/doubletdoublet
Overlap geneCand1
Upstream geneLOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417
Downstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik, Hmga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480L12.T7 (MSMg01no480_l12.b1)MSMg01-480L12.TJ (MSMg01no480_l12.g1)
ACCAG561293AG561294
length716720
length of high quality
(start - end)
598 (78 - 675)277 (369 - 645)
definitionCHROMAT_FILE: MSMg01no480_l12.b1 PHD_FILE: MSMg01no480_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:07 2005CHROMAT_FILE: MSMg01no480_l12.g1 PHD_FILE: MSMg01no480_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,861,868 - 118,862,337)(118,684,018 - 118,684,294)
sequence
AAACTCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGAACAGGGGC
GGAATTCTGGTCTTTTCAAGAACAGCAAGGGCTGTCATTTCAATACTGTT
AAGAATCTTAGTGTAAATTTCTGTATTTTCCAATGGTCTTAGGGAACCCC
TGTGAAAAGGTCATTAAACAACTCCAAAGTGGTCGAGGCCCCCAGGTTAA
GAACTACTGAACTGAGCCATCTCATATGTGTGCTTTAAAAAATATATACT
TTATTTATATGAGTACACTGTCACTGACACACTAGAAGAGGGCATCAGAT
CCCATTACAGATGGTTGTGTTTTTCCATGTAGTTGCTGGGAATTGAACTC
AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCC
AGCCCTATTTGTGCTTATTTTTAAAGCATCACTTCACCAATGTTTATCAG
GAGACATATCCAGCATCAACTTTAGCTTTAAACTTCTTATCTGGTTAATT
TCAACTAATTAAAAAAATAACATTAATAACGATATAGGATTTAGGCAATT
AAAATAAATATTCAGCTCAGGAACCCCTTATATACCTCTTCCAAGACAAT
GTTCAATCAACAGTCAAGGCTGTTAATGTTGTTCATTTCAAACTAAGTTA
CTGAAGTTATTTCTGCTATTTGCAGAAATCATTTACAAATACTGTGTGTT
ACCAAACACTATTACG
NCCCCGATATAGTGGGAGGCCTGGNGGNCGCCTGGTTTCAAAACAGGGGG
TGAACTATAGAAGTTTTCAAAAAAACGGCCTAGATGTCAAAAGAAGCAAA
GGTATTTAAGACTAGCGGTTAAGACCTATTTCAAACGGATGGGAAACAAC
CCAACAGCTAGTTTTTCCTATGATCTATTCTCTACCAAACAACTGCTAGA
AGCTCTTGGTTAATTTCTAGTGGTCCTCTAAATCAAATGTAATTGCTATT
CTCTTAAGGAATTATTCTCGAGGATGTGGAAATATATTTGCGGCATATTA
GTGGAAACTACAGAGGTTATTCANGTCCTTAAGGGGCTCCCTCAAATACC
TATCATTCCAACGTTGCGTGTGACTTTTATGTCAGGATTAGCGATAAAGG
AAACGGCATACATTCCTGCTATGAATTACTAAGAGAGTTCTTCTAGGATG
CTTAGGGCAAATACAATTAAGACTGTACACATGTCCGGCTTGTCATTGCT
TTGGACACAAGGACACAGAAGATCTGCTAGAATCCAGCACATGTGAGGGT
TTTCTTCAACCATAGATACTGTGTGGATGATGCCCCATCCTGTTGTTTAA
AAATATATTCTTCTGCCTGGAGAAGTGGCTCAGGGGTTAAGAGCACTGAT
TGTTCTTCCAGAGGTCCTGAGTTCAAATCCGAGCAATCACAGGGTGTTTC
ACAACCATCTGTAATGGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_l12.b1 MSMg01no480_l12.b1 CHROMAT_FILE:
MSMg01no480_l12.b1 PHD_FILE: MSMg01no480_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:07 2005
         (598 letters)



>mm_chr10_118861340_118862337
          Length = 998

 Score =  870 bits (450), Expect = 0.0
 Identities = 465/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 129 actgaactgagccatctcatatgtgtgctttaaaaaatatatactttatttatatgagta 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 actgaactgagccatctcatatgtgtgctttaaaaaatatatactttatttatatgagta 939

                                                                       
Query: 189 cactgtcactgacacactagaagagggcatcagatcccattacagatggttgtgtttttc 248
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||   | |
Sbjct: 938 cactgtcactgacacactagaagagggcatcagatcccattagagatggttgtgagctac 879

                                                                       
Query: 249 catgtagttgctgggaattgaactcaggacctctggaagagcagtcagtgctcttaacca 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 catgtagttgctgggaattgaactcaggacctctggaagagcagtcagtgctcttaacca 819

                                                                       
Query: 309 ctgagccatctctccagccctatttgtgcttatttttaaagcatcacttcaccaatgttt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctgagccatctctccagccctatttgtgcttatttttaaagcatcacttcaccaatgttt 759

                                                                       
Query: 369 atcaggagacatatccagcatcaactttagctttaaacttcttatctggttaatttcaac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 atcaggagacatatccagcatcaactttagctttaaacttcttatctggttaatttcaac 699

                                                                       
Query: 429 taattaaaaaaataacattaataacgatataggatttaggcaattaaaataaatattcag 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 taattaaaaaaataacattaataacgatataggatttaggcaattaaaataaatattcag 639

                                                                       
Query: 489 ctcaggaaccccttatatacctcttccaagacaatgttcaatcaacagtcaaggctgtta 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctcaggaaccccttatatacctcttccaagacaatgttcaatcaacagtcaaggctgtta 579

                                                             
Query: 549 atgttgttcatttcaaactaagttactgaagttatttctgctatttgcag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgttgttcatttcaaactaagttactgaagttatttctgctatttgcag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no480_l12.g1 MSMg01no480_l12.g1 CHROMAT_FILE:
MSMg01no480_l12.g1 PHD_FILE: MSMg01no480_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:07 2005
         (277 letters)



>mm_chr10_118683818_118684494
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgacttttatgtcaggattagcgataaaggaaacggcatacattcctgctatgaatta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgtgacttttatgtcaggattagcgataaaggaaacggcatacattcctgttatgaatta 260

                                                                       
Query: 61  ctaagagagttcttctaggatgcttagggcaaatacaattaagactgtacacatgtccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagagagttcttctaggatgcttagggcaaatacaattaagactgtacacatgtccgg 320

                                                                       
Query: 121 cttgtcattgctttggacacaaggacacagaagatctgctagaatccagcacatgtgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtcattgctttggacacaaggacacagaagatctgctagaatccagcacatgtgagg 380

                                                                       
Query: 181 gttttcttcaaccatagatactgtgtggatgatgccccatcctgttgtttaaaaatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttcttcaaccatagatactgtgtggatgatgccccatcctgttgtttaaaaatatat 440

                                                
Query: 241 tcttctgcctggagaagtggctcaggggttaagagca 277
           ||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tcttctgcctggagaagtggctcagtggttaagagca 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)