BAC Information

Click to search

BAC

Clone NameMSMg01-480L22
Chromosome10 (Build37)
Map Location 24,438,155 - 24,438,752
singlet/doubletsinglet
Overlap genenone
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1
Downstream geneEnpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480L22.T7 (MSMg01no480_l22.b1)MSMg01-480L22.TJ (MSMg01no480_l22.g1)
ACCAG561312AG561313
length756743
length of high quality
(start - end)
554 (74 - 627)598 (74 - 671)
definitionCHROMAT_FILE: MSMg01no480_l22.b1 PHD_FILE: MSMg01no480_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:09 2005CHROMAT_FILE: MSMg01no480_l22.g1 PHD_FILE: MSMg01no480_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCCAGGACACTTCCAGAAGACCAAACCTAAGGATAATAGGTATAGA
AGAGAGTGAAGATTCCCAACTTAAAGAGCAGTAAATATCTTCAACAAAAT
TAAAGAAGAAAACTTCCCTAACCTAAAGAAAGAGATGCCCATGAACATAC
AAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCC
TGCCATATAATAACCAAGACACCAAACACACTAAACGAAGAAAGAATATT
AAAAGCAGTAAGAGGAAAAGGTCAAGTATCATACAAAGGCAGACCTATCA
GAATTGTACCAGACTTCTCACTAGATACTATGAAAGCTAGAAGATCCTGG
GCAGATTTCATACAGACCCTAAGAGAACACAAATGCCAACCCAGACTACT
ATACCCAGCAAAACTCTCAATTATCATAGATGGAGAAACCAAGATATTGC
ATGACAAAACCAAATTTACACAATATCTTTCCACAGATCAAGCCCTACAA
AGGATAATGGAAAATGCCAACACAAGGAAACCCTAGAAAAAGCAAGAAGG
TAAACTTTCAATTAACCCTATAGATGCAAATCAAAACAACCCTGATATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAGAAACTCAGGTGACAGCAG
AAGCTGTTGAGGTTGTGGAGAAAGAAGACACTTCTCCATTGGTGGAACTG
GCAGCT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCAGGAATTCAATCTCCATGGGCAGCTTTACCTGGGA
CAAGAAATTGCTAGTAAAGGACCATTCTTTTTCTACGTATGGCGGGCATC
GTGCCCGTTCTCTGGGAATCCTTTGAAGTTTTAAAGAGTCCGCATACAAC
GGAGTAATTTCTTTTAAACCCTGTCCTCCTGAATCACCAGAGATTGAATG
GGGATTAAGAGTTGCATCACTAGCTCAGATCTGCTGGTCTCTGGAGTTAC
TCACACGGGGAAATAAATATGCTTGTCCTTCCTGTTTGTTTATCCACATC
TACGATGCCCCAGTATTTCCTAGCAAGGATTGGGCAGGGCTCTCATGCAG
TGCTAGGTGGGCTTTTCCTTGATTGCTTCACCGATTTCTCCGCATCTCGC
CACACATTCTCAATGTCTACATGGTCAGGATCTGGTCTGACGTGATCCAT
GAGTAAAAGCCACCATATCTTCTGAGATCCTTCTGGACATGGCTGACTTG
TTTTCTCGGCCCCACCAAGGCTCAGAAATATTTTATAGCTCACTATACTC
CCCCTCGGTTTGTGGTAGAGCTGCACGTGCTTCTGAGTAAAGCCACGCCC
TCCGCCCCACCCTTTTCTGAGGTCAGGTTTGACCCTTGGTGCAAGAGTCA
CTGCCTAGAACACGAAGAACAGTCTTATTTCATAAGCCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_l22.g1 MSMg01no480_l22.g1 CHROMAT_FILE:
MSMg01no480_l22.g1 PHD_FILE: MSMg01no480_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:09 2005
         (598 letters)



>mm_chr10_24437955_24438952
          Length = 998

 Score = 1141 bits (590), Expect = 0.0
 Identities = 596/598 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctccatgggcagctttacctgggacaagaaattgctagtaaaggaccattctttttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aatctccatgggcagctttacctgggacaagaaattgctagtaaagaaccattctttttc 260

                                                                       
Query: 61  tacgtatggcgggcatcgtgcccgttctctgggaatcctttgaagttttaaagagtccgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgtatggcgggcatcgtgcccgttctctgggaatcctttgaagttttaaagagtccgc 320

                                                                       
Query: 121 atacaacggagtaatttcttttaaaccctgtcctcctgaatcaccagagattgaatgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacaacggagtaatttcttttaaaccctgtcctcctgaatcaccagagattgaatgggg 380

                                                                       
Query: 181 attaagagttgcatcactagctcagatctgctggtctctggagttactcacacggggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaagagttgcatcactagctcagatctgctggtctctggagttactcacacggggaaa 440

                                                                       
Query: 241 taaatatgcttgtccttcctgtttgtttatccacatctacgatgccccagtatttcctag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaatatgcttgtccttcctgtttgtttatccacatctacgatgccccagtatttcctag 500

                                                                       
Query: 301 caaggattgggcagggctctcatgcagtgctaggtgggcttttccttgattgcttcaccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaggattgggcagggctctcatgcagtgctaggtgggcttttccttgattgcttcaccg 560

                                                                       
Query: 361 atttctccgcatctcgccacacattctcaatgtctacatggtcaggatctggtctgacgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttctccgcatctcgccacacattctcaatgtctacatggtcaggatctggtctgacgt 620

                                                                       
Query: 421 gatccatgagtaaaagccaccatatcttctgagatccttctggacatggctgacttgttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatccatgagtaaaagccaccatatcttctgagatccttctggacatggctgacttgttt 680

                                                                       
Query: 481 tctcggccccaccaaggctcagaaatattttatagctcactatactccccctcggtttgt 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 tctcggccccaccaaggctcagaaatattttagagctcactatactccccctcggtttgt 740

                                                                     
Query: 541 ggtagagctgcacgtgcttctgagtaaagccacgccctccgccccacccttttctgag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtagagctgcacgtgcttctgagtaaagccacgccctccgccccacccttttctgag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)