BAC Information

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BAC

Clone NameMSMg01-480M08
Chromosome10 (Build37)
Map Location 21,407,035 - 21,407,602
singlet/doubletsinglet
Overlap genenone
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
Downstream geneEG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480M08.T7 (MSMg01no480_m08.b1)MSMg01-480M08.TJ (MSMg01no480_m08.g1)
ACCAG561332AG561333
length724725
length of high quality
(start - end)
560 (73 - 632)263 (324 - 586)
definitionCHROMAT_FILE: MSMg01no480_m08.b1 PHD_FILE: MSMg01no480_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:11 2005CHROMAT_FILE: MSMg01no480_m08.g1 PHD_FILE: MSMg01no480_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATGGTTGCACACGGGCAGTTTAACCACAGGTAGATTTAGCAA
AGCAAAGAGGGGATGGAGTGGGCTGTTCCAAAGGGGCTTAGAAGGCTGGT
GGATTCTGTATTGCTGATTTAAGAGGAACTTATGAATATTTATGGATGGA
TGGCATATTTATGAAGGCGAGGCCAACTTTCTCCTGTCCAAGTTAGGGTA
GACTAGATCTCTTATCTAGGGCATTTCTTTTGTAATTCTCTTTAGATATC
TATGGGAGGTGGTGGGTGTGGGCCGGTATTTCAAAGGCATGTAGAGGTGA
TTGCATAATACAGTCAGTCACAGAATGTGTCATATTGATGGTGTTTGTTG
ATAAGTCATGTATGGCAGGTTGTTGGCTCCTCCCCCCAAAAAAAACAATA
ATAAGAGAGAAGAGATAAGGGGCATTGCAGTGTTGTTTCTCTTTTTATGC
TTGTCAGGTTGGGTGCCAGAGGTGAAGCGGGTGGTTAGATAGCAGCTGCA
CCCTAGAAGCCATGGGTCATGTGATCCGAGCTCAGCTACATACGCCAATC
ATTTCTACTTCTGTACTTTTATCAACGGAATTACAGCAACCTATGTTTTC
AGTAAACTTTAACTGCAGGTTTCATTTCACATTTTAAAAATCGTTTATTA
AGCATCAGCCCACTGAAATGATTN
ACGATGATGTGNGAGGCCTGGCGGCCGCCTGTTTCACAACATGGGGTGAA
CTATAGAAGTTTCGCGAAAATCCTGATTTTTCCCAACTCGCCCTCCTGAA
TATCAGGATTGCAAAGAACATCACTTTGCTCGGATGACAAATGACTTAAT
AGAGAGAGCTTATAGGAGTTTTAAAAAAAAATCAGAAGAACAAAAGTAAA
TTTGAATAAATATATGTACACGACAAGCATTCAAAGCTAGCGAGACGCGT
AAGAAATAGTTACTTTTATATAGTTCAGTGGATATGAATATTTATGAAAA
CAACTGAGTAATATTTATGCATAATGAAAATATGCTCGTCTACTGACTCA
GCACTCTTCCTTTGTAAGCCAGGCATGGTGGCGCATACAAGCAATGCCTT
CTGTGTACCCTCGGGGACTGCCACAAGACTGGCAAGAGTTCCAGGCCAGC
CTGGGCTATAGTGTGAGACTCTGTATGAACAAACAAAAGCAAAGCAAAAC
AACAACAACAAAAATCAAAAATTCTACCTCTTAGAATAAACTCTTTGAAA
AGATAAGCACTCTCATGTGTGATGCTTCATATAAGATGCTTGCTGCAAGA
CAGTTACACAGCAAGAGTTTGGGCAGACAGAAGCATGGTGAAATGAACTG
TGCAACCATACTAAAATCTCCCCCCCCACCTCCTCTCTCTGTCTCTCTCC
TTTCTCCTGCCTCTATCTGTTTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_m08.b1 MSMg01no480_m08.b1 CHROMAT_FILE:
MSMg01no480_m08.b1 PHD_FILE: MSMg01no480_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:11 2005
         (560 letters)



>mm_chr10_21406835_21407802
          Length = 968

 Score =  998 bits (516), Expect = 0.0
 Identities = 553/570 (97%), Gaps = 12/570 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagtttaaccacaggtagatttagcaaagcaaagaggggatggagtgggctgttccaaa 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gcagtttaaccacaggtagatttagcaaagcaaaga-gggatggagtgggctgttccaaa 259

                                                                       
Query: 61  ggggcttagaaggctggtggattctgtattgctgatttaagaggaacttatgaatattta 120
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 260 ggggcttagaaggctggtggattctgta-tgctgatttaagaggaacgtatgaatattta 318

                                                                       
Query: 121 tggatggatggcatatttatgaaggcgaggccaactttctcctgtccaagttagggtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggatggatggcatatttatgaaggcgaggccaactttctcctgtccaagttagggtaga 378

                                                                       
Query: 181 ctagatctcttatctagggcatttcttttgtaattctctttagatatctatgggaggtgg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctagatctcttatctagggtatttcttttgtaattctctttagatatctatgggaggtgg 438

                                                                       
Query: 241 tgggtgtgggccggtatttcaaaggcatgtagaggtgattgcataatacagtcagtcaca 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgggtgtgggccggtgtttcaaaggcatgtagaggtgattgcataatacagtcagtcaca 498

                                                                       
Query: 301 gaatgtgtcatattgatggtgtttgttgataagtcatgtatggcaggttgttggctc--c 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 499 gaatgtgtcatattgatggtgtttgttgataagtcatgtatggcaggttgttggctcgcc 558

                                                                       
Query: 359 t-----ccccccaaaaaaaa---caataataagagagaagagataaggggcattgcagtg 410
           |     ||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttccccccccccaaaaaaaaaaacaataataagagagaagagataaggggcattgcagtg 618

                                                                       
Query: 411 ttgtttctctttttatgcttgtcaggttgggtgccagaggtgaagcgggtggttagatag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttgtttctctttttatgcttgtcaggttgggtgccagaggtgaagcgggtggttagatag 678

                                                                       
Query: 471 cagctgcaccctagaagccatgggtcatgtgatccgagctcagctacatacgccaatcat 530
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 679 cagctgcaccctagaagccatgggtcatgtgatccgagcgcagctacatacaccaatcat 738

                                         
Query: 531 ttctacttctgtacttttatcaacggaatt 560
           ||||||||||||||||||||||||||||||
Sbjct: 739 ttctacttctgtacttttatcaacggaatt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 968
Length adjustment: 10
Effective length of query: 550
Effective length of database: 958
Effective search space:   526900
Effective search space used:   526900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)