Query= MSMg01no481_b18.b1 MSMg01no481_b18.b1 CHROMAT_FILE:
MSMg01no481_b18.b1 PHD_FILE: MSMg01no481_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:37 2005
(677 letters)
>mm_chr10_5107375_5108451
Length = 1077
Score = 1025 bits (530), Expect = 0.0
Identities = 575/590 (97%)
Strand = Plus / Minus
Query: 88 atgtatattctgccataaagcaggatgatggaactgaagaccaccatgttaagcaaaaca 147
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1077 atgtatgttctgccagaaagcaggatgatggaactgaagagcaccatgttaagcaaaaca 1018
Query: 148 agccaggctaagaggaacaaacatcatgattttcttcatgtgtagacttaggagaataaa 207
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 agccaggctaagagaaacaaacatcatgattttcttcatgtgtagacttaggagaataaa 958
Query: 208 ataacggacttgagagtaaatgggggcctattagggacatgggttgagttagggggtggt 267
|||| ||||||||||||| |||| |||||||||||||||||||| ||| ||||||| |||
Sbjct: 957 ataatggacttgagagtacatggaggcctattagggacatgggtggaggtagggggcggt 898
Query: 268 aagagagggcagaaaaggtgtgatcaggagatgtgccagaatgccacaagaaaactcaca 327
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 aagagagggcagaaaaggtgtgatcaggagatgtgccagaatgccacaagaaaactcact 838
Query: 328 gtgtcatataatttaatacacaatgcaaactgaaaaatagaaaaatcagaatttaaataa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtgtcatataatttaatacacaatgcaaactgaaaaatagaaaaatcagaatttaaataa 778
Query: 388 ccaccaattctttctttcttggctcaaaaatgtacatttatttctttccttacaccgtgc 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 777 ccaccaattctttctttcttggctcaaaaatgtacatttatttctttccttacaccatgc 718
Query: 448 tttccaaagtctgatgtgtggactgatgtgaacgttttcatgacttaatgtaaaccacgt 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 717 tttccaaagtctgatgtgtggactgatgtgaacgttttcatgacttaatgtaaatcacgt 658
Query: 508 aagcccagggcaccctgggatggagtaaatgggcgtttttctgtgagggttaaatggaca 567
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 657 aagcccagggcaccctgggatggagtaaatgggcgtttctctgtgagggttaaatggaca 598
Query: 568 attgtgttatattggcccccatcataagcaaattaaaatctttacttaatgttgttaatt 627
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 597 attgtgttatattggcccccatcataagcaaattaaaatctttacttaatattgttaatt 538
Query: 628 tatctggcagtagtaacagccacaagtaaattcctacatgacattttccc 677
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tatctggcagtagtaacagccacaagtaaattcctacatgacattttccc 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_b18.g1 MSMg01no481_b18.g1 CHROMAT_FILE:
MSMg01no481_b18.g1 PHD_FILE: MSMg01no481_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:37 2005
(692 letters)
>mm_chr10_4937925_4939014
Length = 1090
Score = 1220 bits (631), Expect = 0.0
Identities = 673/693 (97%), Gaps = 16/693 (2%)
Strand = Plus / Plus
Query: 1 caggacaaaattaaagatcacttgtacattttgatgtctttagcatttcatgagtttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacaaaattaaagatcacttgtacattttgatgtctttagcatttcatgagtttatg 260
Query: 61 gtcaaatatgagttcaactccccccccaatgttcttcaagggaatttgcatgtttataaa 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaaatatgagttcaactccccccc-aatgttcttcaagggaatttgcatgtttataaa 319
Query: 121 tgaaattctttccagaatctgctgagctctgtatggccttccccctgctctgtaatttaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaaattctttccagaatctgctgagctctgtatggccttccccctgctctgtaatttaa 379
Query: 181 ttgtacatcttaatggcatttccaattcacaagtggatgtggagtcatatttgagatgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtacatcttaatggcatttccaattcacaagtggatgtggagtcatatttgagatgtg 439
Query: 241 caaatttacattatatggttattttcaattcacttatatgaatagaatcactttgtagat 300
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caaatttacagtagatggttattttcaattcacttatatgaatagaatcactttgtagat 499
Query: 301 gtgctagtttattataagaaaaagagcaacttcacagtgattatttttatgtttgtatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgctagtttattataagaaaaagagcaacttcacagtgattatttttatgtttgtatca 559
Query: 361 agcctatggctaggtctaaatgataaatgatgagttttaaatattctgtgggcatgttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 560 agcctatggctaggtctaaatgataaatgatgagttttaaatattctgtgg-catgttta 618
Query: 421 agaatttcatggcgtaaaattaagtgattattatataaataataaggccccaaagtaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agaatttcatggcgtaaaattaagtgattattatataaataataaggccccaaagtaagc 678
Query: 481 ctcgttacatgggattgcttaaatgtaaatctagttatgtttaattcagcattagttggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctcgttacatgggattgcttaaatgtaaatctagttatgtttaattcagcattagttggc 738
Query: 541 atgtaatatatatgataacattataatatttaacatgatatattataaataataacattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgtaatatatatgataacattataatatttaacatgatatattataaataataacattt 798
Query: 601 attgaaaaatcaactatttggtcatatatatatatgaccatatatggtcatatttatata 660
||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 799 attgaaaaatcaactatttggtcatatatatatat------atatg----tac--atata 846
Query: 661 tatatataaactcatact-tatatttgactatg 692
|||| ||||||||||| | ||||||||||||||
Sbjct: 847 tataaataaactcata-tatatatttgactatg 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1090
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1080
Effective search space: 736560
Effective search space used: 736560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
