Query= MSMg01no481_c14.b1 MSMg01no481_c14.b1 CHROMAT_FILE:
MSMg01no481_c14.b1 PHD_FILE: MSMg01no481_c14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:42 2005
(716 letters)
>mm_chr5_133405934_133407049
Length = 1116
Score = 1299 bits (672), Expect = 0.0
Identities = 699/708 (98%)
Strand = Plus / Plus
Query: 5 gaattcatagcagggtttaacaaattttaacggtaggctttctctgtgacgatctctctc 64
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcatagcagggtttaacaaattttaacggtgggctttctctgtgacgatctctctc 264
Query: 65 ttgaccttactggatctgtctaatgagaatgaatgaggaggattctcctttcctaattta 124
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 265 ttgaccttactggatctgtctaatgagaatgaatgaggaggagtctccttttctaattta 324
Query: 125 aatcatggggacaaatcataatcagaacaaggatgtactttctgtaggaaatagagtaca 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcatgggggcaaatcataatcagaacaaggatgtactttctgtaggaaatagagtaca 384
Query: 185 ggtggtccatttccgatgccaaggatgactttaataaacgtaagctggccagatctcagg 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtggtccatttctgatgccaaggatgactttaataaacgtaagctggccagatctcagg 444
Query: 245 taaacagcgggcactcagcccctgtcttccctggctgctggcacctgtttgcctaggcac 304
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 taaacagcgggcactcagcccctgtcttccccggctgctggcacctgtttgcctaggcac 504
Query: 305 ttatagtttatcttaggtttgatatgcgactgtgtccacatataagacagaaggagaccc 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 ttatagtttatcttaggtttgatatgcgactgtgtccacacataagacagaaggagaccc 564
Query: 365 aaccaaatgggaaatttggacgtggttctattatgtatttggagtacccaccaaagggct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaccaaatgggaaatttggacgtggttctattatgtatttggagtacccaccaaagggct 624
Query: 425 ggaacttgtgaaaaatcactcagtcagggcattagctgttctatctttggaattggggcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaacttgtgaaaaatcactcagtcagggcattagctgttctatctttggaattggggcc 684
Query: 485 agttctgaagaaatgaagaagctgatggtttccctgctggtgttattgaggacccagggt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agttctgaagaaatgaagaagctgatggtttccctgctggtgttattgaggacccagggt 744
Query: 545 cttggtagtggacatgactgaggtaggctgtgtgctcctgacgtaatccatggagggaca 604
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 cttggtagtggacatgactgaggtaggctgtgtgctcctgacttaatccatggagggaca 804
Query: 605 tcacaactagaagggacagcagctactgtgcagagctgtcctgaccttggatgctatctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcacaactagaagggacagcagctactgtgcagagctgtcctgaccttggatgctatctg 864
Query: 665 gtagtgacttttgcatctttatgaccaacacattcgatagaaacaact 712
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 865 gtagtgacttttgcatctttatgaccaacacatttgatagaaacaact 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_c14.g1 MSMg01no481_c14.g1 CHROMAT_FILE:
MSMg01no481_c14.g1 PHD_FILE: MSMg01no481_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:42 2005
(688 letters)
>mm_chr10_110603107_110604203
Length = 1097
Score = 1259 bits (651), Expect = 0.0
Identities = 682/697 (97%), Gaps = 9/697 (1%)
Strand = Plus / Plus
Query: 1 cagagaacaattgaggtataggtaaattgcttgttacgctctctcttcccctggggtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaacaattgaggtataggtaaattgcttgttacgctctctcttcccctggggtttc 260
Query: 61 atctaaatttgatcatgccgagagactgggatcagttgctgtgcttgctagaacctgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaaatttgatcatgccgagagactgggatcagttgctgtgcttgctagaacctgttt 320
Query: 121 tgcagtgagattattaaaatgctggttttataaaaacaggttttataaaaggaagggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcagtgagattattaaaatgctggttttataaaaacaggttttataaaaggaagggaaa 380
Query: 181 ggccatgcaatttaaaatgcactctattaaaagtccaactaatttctaacgtgttactct 240
||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||
Sbjct: 381 ggccatgcaatttaaaatgcactctattaaaagaccaactaatttctaacatgttgctct 440
Query: 241 ttcttttgggtagcaagtatgtactctgtcttttggtagcaagaatgactg-----tgct 295
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttcttttgggtagcaagtatgtactctgtcttttggtagcaagaatgactgcagtgtgct 500
Query: 296 tgttcaaagtgttagcaaaggggatagatgaaatttaagaccttcctaaagctctttaat 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgttcaaagtgttagcaaaggggatagatgaaatttaagaccttcctaaagctctttaat 560
Query: 356 tatggagattacgttgttgcggtcaaattccatgtgaacagtttgagccccagagatcac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggagattacgttgttgcggtcaaattccatgtgaacagtttgagccccagagatcac 620
Query: 416 agaggtgcctagaaatgctgtttaattaaacctggacatggtttgctccttgcattgagt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaggtgcctagaaatgctgtttaattaaacctggacatggtttgctccttgcattgagt 680
Query: 476 tgtgctcattactgaatgtgtggtctgtgcaaatggtctgt----tcatttagaattgtc 531
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tgtgctcattactgaatgtgtggtctgtgcaaatggtctgtctgttcatttagaattgtc 740
Query: 532 atttttatgtgttgcttttcttttctgagatagggttttgctgtgttgcctacctggcca 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 741 atttttatgtgttgcttttcttttctgagatagggttttgctgtgttgcctagctggcca 800
Query: 592 tggtattcattatgtagctccggcttggcaaaatcctcctgcctcagcctcccgacttcc 651
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tggtattcattatgtagctccggcatggcaaaatcctcctgcctcagcctcccgacttcc 860
Query: 652 acatgtattccactgtacctagcttttgttacatttt 688
|||||||||||||||| ||||||||||||||||||||
Sbjct: 861 acatgtattccactgtgcctagcttttgttacatttt 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1097
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1087
Effective search space: 736986
Effective search space used: 736986
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
