BAC Information

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BAC

Clone NameMSMg01-481D05
Chromosome10 (Build37)
Map Location 67,667,156 - 67,667,758
singlet/doubletsinglet
Overlap geneArid5b
Upstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
Downstream geneLOC100040136, 1700040L02Rik, EG665342, Tmem26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481D05.T7 (MSMg01no481_d05.b1)MSMg01-481D05.TJ (MSMg01no481_d05.g1)
ACCAG561662AG561663
length769771
length of high quality
(start - end)
662 (27 - 688)603 (67 - 669)
definitionCHROMAT_FILE: MSMg01no481_d05.b1 PHD_FILE: MSMg01no481_d05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:45 2005CHROMAT_FILE: MSMg01no481_d05.g1 PHD_FILE: MSMg01no481_d05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTCACTG
GCCTTATTGTGTTTCCCATCATCCTGATGAAGCAGCTAGGTTGACAGAAG
AAGTGGCTGGCCATTGGAGGATGCAGTTGCTGGGCCAGCCAGGTCATAAT
ACCCTGAGGGACTGGGACAAATGTTCTATAGAAGGCTTTATATTTCCTGA
TTCATTCTCTAATATTATGGTGGTGTTCCTCCCAGAGTTAAGAACTAAGG
AGTTGCAGTGAGGATATACCCCCCTCAACATTGTCTCCAGTGACACACAA
GCAACCTGAGGATATTACATACAGGAATGACCTCACCAACAGACACAGCA
GTGAACCCACTCACTGAACCAATGTTAACATTGTGAGCCACATAGCCTTG
GCTCCTTGTGTCTCCGACTGGATAGACAGAAATGGGCATCATGGTACATG
CTCATTGACTCTAACATTCAAGGGGAAATTAGACGAAGTAGTTTATAATG
AAGGTAAGAAGCCCTAGACCTGTAATAGAGGACATATTGGTAATAGAGGA
CACCTTGCCCTGTGTCTCTAAGATCAATGAAATGCTACAAAAGACCAGTA
TAGACAGAGCTGGTGGCTTAGGCTCTCATTCCCAAGGCAATTTACATAAA
GAGCTGGGACCAGCTTAATGGACTCAAGCAAGTCCAATCCAGAGTAGGCA
ACAGGAAAAGGCAGTAATATACACCAGCTATGACCCGTTATAGAAGCCAA
AGATCATAATTCTCAGACC
AGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCACAGCCAGAAAAGACAGTAGGGTAAGAAGAT
GGACATACTAACCACCTGACCACGGGAATAGGATGCAGTGACTATGATGG
TCAGCAGCAGTCTGCTCCTGCTTTTGAGAGCCCACAATGGTCCCGGGTAA
AACAGGACGTGTGACATCGCTAATGAGTAGAAGAGGTTTAGTCGGCTTCC
ATAAGTCTCAGAAGAAGGACAAAACCACGCCCCTCTGTGGGGAGTTCCCT
TAAGATGAAGGTTGGGCTAGAGCTCTTTTGGCTGTCAACTTCAACAGACA
GCCATGTGGCCACTGCTGTCTGACTTTCTGCCTTAAAAAAAAACAAAAAC
AAAAACAAAAACAAAACTGGAAGGGGCACTGGAGTGTAGGTGTCAATTAA
ACAAAACCAAACCAAAATATTGACTAAAAACAACAACTATAAAAACAGTA
CATATTCAGAAAGCTTCCCCTACTGACTTAAAGGTCATGGTATTTTCTCC
TGATTTGAAAAGATGTGAAAGCATTGTTTGGTGGGGCCTTAAAGTTACTG
TGGGCTTTAGCCACTCACAGTGCCTGCTATGGCTCCCGGATAAAAAGGGT
TGGGAACCCTTGTATTCAGCGGGCCTGGAGCTGAAAGAGCACATTTGAAA
GGGCTAGGTCCTAGTCCAGAGGAGGGGCTCCGTAGAGGGAAAAAGTCCAG
AAGAAAATCCCAGTTGAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_d05.g1 MSMg01no481_d05.g1 CHROMAT_FILE:
MSMg01no481_d05.g1 PHD_FILE: MSMg01no481_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:45 2005
         (603 letters)



>mm_chr10_67666956_67667958
          Length = 1003

 Score = 1166 bits (603), Expect = 0.0
 Identities = 603/603 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacagccagaaaagacagtagggtaagaagatggacatactaaccacctgaccacggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacagccagaaaagacagtagggtaagaagatggacatactaaccacctgaccacggg 260

                                                                       
Query: 61  aataggatgcagtgactatgatggtcagcagcagtctgctcctgcttttgagagcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataggatgcagtgactatgatggtcagcagcagtctgctcctgcttttgagagcccaca 320

                                                                       
Query: 121 atggtcccgggtaaaacaggacgtgtgacatcgctaatgagtagaagaggtttagtcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggtcccgggtaaaacaggacgtgtgacatcgctaatgagtagaagaggtttagtcggc 380

                                                                       
Query: 181 ttccataagtctcagaagaaggacaaaaccacgcccctctgtggggagttcccttaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccataagtctcagaagaaggacaaaaccacgcccctctgtggggagttcccttaagat 440

                                                                       
Query: 241 gaaggttgggctagagctcttttggctgtcaacttcaacagacagccatgtggccactgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggttgggctagagctcttttggctgtcaacttcaacagacagccatgtggccactgc 500

                                                                       
Query: 301 tgtctgactttctgccttaaaaaaaaacaaaaacaaaaacaaaaacaaaactggaagggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctgactttctgccttaaaaaaaaacaaaaacaaaaacaaaaacaaaactggaagggg 560

                                                                       
Query: 361 cactggagtgtaggtgtcaattaaacaaaaccaaaccaaaatattgactaaaaacaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactggagtgtaggtgtcaattaaacaaaaccaaaccaaaatattgactaaaaacaacaa 620

                                                                       
Query: 421 ctataaaaacagtacatattcagaaagcttcccctactgacttaaaggtcatggtatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctataaaaacagtacatattcagaaagcttcccctactgacttaaaggtcatggtatttt 680

                                                                       
Query: 481 ctcctgatttgaaaagatgtgaaagcattgtttggtggggccttaaagttactgtgggct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcctgatttgaaaagatgtgaaagcattgtttggtggggccttaaagttactgtgggct 740

                                                                       
Query: 541 ttagccactcacagtgcctgctatggctcccggataaaaagggttgggaacccttgtatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagccactcacagtgcctgctatggctcccggataaaaagggttgggaacccttgtatt 800

              
Query: 601 cag 603
           |||
Sbjct: 801 cag 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)