BAC Information

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BAC

Clone NameMSMg01-481I12
Chromosome10 (Build37)
Map Location 89,945,375 - 89,946,030
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneNr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481I12.T7 (MSMg01no481_i12.b1)MSMg01-481I12.TJ (MSMg01no481_i12.g1)
ACCAG561915AG561916
length749793
length of high quality
(start - end)
656 (67 - 722)97 (130 - 226)
definitionCHROMAT_FILE: MSMg01no481_i12.b1 PHD_FILE: MSMg01no481_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005CHROMAT_FILE: MSMg01no481_i12.g1 PHD_FILE: MSMg01no481_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAATCCGCGGAATTCAG
AGATATTATTTCAGAAATTTTAAAAAAACTGTAAGTCTATTTAGAGACAT
AGACAAAAACCAAAAACCATAAATTTATTCTCAAGTGAGTTTGGACCATG
CTGTTGTAAAGAATAAAGCCCAGTGCCACTGTTTCAATTTCCCTAAGTCT
TGGCTTCCCTCCCGGGCACAACAGCCACCACTTCTTGTTTTGCACTTCAC
ATCTTAGTGAATTTAAACTATTGGCAGCTCTTTCTCTCATCACACAATGC
TCTTCTGTTTTAGTCCATCTGCTTCCTTGGCCTAGAATGTCATTGGTTTG
TCCTTTTACCCTATTATCTACCATCTGACCAGCTTCATTCTCATCCTTAT
GACTCGGCTCAGGTAACCAACCCCATAAGACCTTCTCTTTATTTCCTCTG
CCTGCATCTTGGCTAGGTACTTCCTTCACTTTTGTTCCCTTACATACTTT
GTTGTCACATAGACTTCTTCCAAGTGGGACATTCCTAATATTAGGGTCAA
AGTGATCTTTCAATTAATAGCCTCACCCTCTGTCATAAGGCATGAATGAA
TACTCAGTTAAAACAATATTTATTAAGGTACTGAGAGTAATTAGTTGTGA
GTTGTACCCATGCAGTCCCCCCCATACTTCCTTGTATGACATATATTGCA
TTCATTCATTCAATGGTAGAAAGCTTAGTCTCATAGAACTAGATCGATA
GTGTGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCCGAATCTTAATAAGGAGGTCTGACTGGTGTTAAAGGCGCT
GGTAAGATGTGCTGGTGACTCATTACTCACTACCTTTAACCTTTGCCCTG
ATCAGTTTCCACATTATCCTTCCAGACTTCTTAGCGACTTCAGATTTTCA
AGAGGAACATCTCCCTACCTACCGACCATCCTACCCCAACTCTCTGCTAC
CCAACTCCTTTCCCTATGTCCTTATCTCATAGTCTTTCTCAGGGAAACCC
CTTTGGCATCCACATATATTCTTTGCCCCGAATAAATGTATATGCCTCAG
CTTTCAACTTTTCTAATATTTCTTCCCTTGATAAGCCTTGTGACCAAAAT
TATGGAGTTAATTCAGTGTTCTCAGCTGTCTGATTTCTGTCACCCAATAT
TTTCCTGTCCTTTTTCTCACCATATAGCCTTTACTCCTATTTCCTGCCCC
TAATTGTACTACTGTGATTAATTTGCCAATGTTTCTCACTAATTTTACCC
TTAATACCTTGATCCTAACACTTATGGTGTTTATAAAACAATCTTCCTTT
TTCCTTATTCTACATTTAAGTGTACTCCGGCCCTTATATTTATACCTTGC
TTGTCTTTATTACATTTCCCGTTATTTTTTTCTCCTTTATGGCGCTTGGT
CTTCACTTTCTCCCCCCTATTTCTCAAATTAAAATATTCTTACCCCCGGA
TGCCCCGCATCTCCCCGTCTGGCCGCCAATTTTGCTTTACTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_i12.b1 MSMg01no481_i12.b1 CHROMAT_FILE:
MSMg01no481_i12.b1 PHD_FILE: MSMg01no481_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:12 2005
         (656 letters)



>mm_chr10_89945175_89946230
          Length = 1056

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttaaaaaaactgtaagtctatttagagacatagacaaaaaccaaaaaccataaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 attttaaaaaaactgtaagtctatttagagacatagacaaaaaccaaaaaccataaattt 797

                                                                       
Query: 61  attctcaagtgagtttggaccatgctgttgtaaagaataaagcccagtgccactgtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 attctcaagtgagtttggaccatgctgttgtaaagaataaagcccagtgccactgtttca 737

                                                                       
Query: 121 atttccctaagtcttggcttccctcccgggcacaacagccaccacttcttgttttgcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atttccctaagtcttggcttccctcccgggcacaacagccaccacttcttgttttgcact 677

                                                                       
Query: 181 tcacatcttagtgaatttaaactattggcagctctttctctcatcacacaatgctcttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcacatcttagtgaatttaaactattggcagctctttctctcatcacacaatgctcttct 617

                                                                       
Query: 241 gttttagtccatctgcttccttggcctagaatgtcattggtttgtccttttaccctatta 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gttttagtccagctgcttccttggcctagaatgtcattggtttgtccttttaccctatta 557

                                                                       
Query: 301 tctaccatctgaccagcttcattctcatccttatgactcggctcaggtaaccaaccccat 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tctatcatctgaccagcttcattctcatccttatgactcggctcaggtaaccaaccccat 497

                                                                       
Query: 361 aagaccttctctttatttcctctgcctgcatcttggctaggtacttccttcacttttgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagaccttctctttatttcctctgcctgcatcttggctaggtacttccttcacttttgtt 437

                                                                       
Query: 421 cccttacatactttgttgtcacatagacttcttccaagtgggacattcctaatattaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cccttacatactttgttgtcacatagacttcttccaagtgggacattcctaatattaggg 377

                                                                       
Query: 481 tcaaagtgatctttcaattaatagcctcaccctctgtcataaggcatgaatgaatactca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcaaagtgatctttcaattaatagcctcaccctctgtcataaggcatgaatgaatactca 317

                                                                       
Query: 541 gttaaaacaatatttattaaggtactgagagtaattagttgtgagttgtacccatgcagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttaaaacaatatttattaaggtactgagagtaattagttgtgagttgtacccatgcagt 257

                                                                   
Query: 601 cccccccatacttccttgtatgacatatattgcattcattcattcaatggtagaaa 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cccccccatacttccttgtatgacatatattgcattcattcattcaatggtagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)