BAC Information

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BAC

Clone NameMSMg01-481I24
Chromosome10 (Build37)
Map Location 60,336,747 - 60,337,115
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
Downstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481I24.T7 (MSMg01no481_i24.b1)MSMg01-481I24.TJ (MSMg01no481_i24.g1)
ACCAG561939AG561940
length752752
length of high quality
(start - end)
575 (70 - 644)650 (76 - 725)
definitionCHROMAT_FILE: MSMg01no481_i24.b1 PHD_FILE: MSMg01no481_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:14 2005CHROMAT_FILE: MSMg01no481_i24.g1 PHD_FILE: MSMg01no481_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAA
TTCTGGGAAATGTACTAGGTCCTGGGAGGCTATTCTGGGGAACAATCTGG
TATCATTTTGTTACATTCCTGAAGGGTAGAAACCAAAATATTGATGCAAG
CAGATAAGGCAAGGTAGTTCTCGGTGCAGGATGGAGGCATCTGAGAGGCC
ATGCCCAGGAAAGGAGCTGGGAGAGGCATGGTGAGATGACTTTGGTGGTT
TGAACGAGAATTGCCTCCACAGGCTCATATATTGGAATGCTTAGTCACTA
GGGAGTGGAACTATTTCAAAGGATTATAAGGATTGGGAGGTATGGCCTTG
GAGGAAGTATGTCACTGGGGGATGGGCTTTGAGGTTTCAGAAGCCAAGCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGT
GTGTGTGTGTGTGTTTGTGTGTGTGTGTTTTTGTGTGTGTGTGTGCCTAA
GGATCAAGATGTAGCTCTCAACTACTGCTCCAGTGCCTGCCTACATGTCA
TGCTCTCTGTCATGATAACAACAGACTAAATCTCTGAAACTGGAAGCAAG
TCCCCAATTAAATGCTTTCTCTTTTATAAGGGTTGCCTTCGTCATGCTCT
CTTCACAGCAATAGAACATGGACTAAGACAACATACCATTGAGTGGCTCA
CACAGTTGATGACCAATATACTAGACTCAGACTAGTGTGTAGGTCAGACA
CC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCAACTCCAGAGGACCCAACAGCTTCCA
AGGCCCCCACTTGCACATAGACAAGCACACATACACATAAATACAAAACG
TCGTGTTTTCAAAGCTCTAGGTAATGCAACTGGACAACAAAGAGAAAATT
TTAAGAAAAAAAATTAAAATTCGAAGCAAAGAAGTAAAGTGACAACAGTG
CAGATGGGACAGAAGCCGAGCTGTGTGACCTACGAGCTTATGAAAGTCTG
GCAGAACGAATAAACACATTCGGTGATGTTGCAGGATTCAAAACAGCACA
TAAATAATTAGCTGTACTTCTGAGACAGACAACAAAAGAAATCCGAAAGA
GAAGTAGAAAAGGCAATCCCATTCATGGTAGCACCAAAAAGGAGGGGACA
CTTAGAAGTCTAACTTGGACAAATATGGACACCAACAGCTGTAAAACACC
TGTGGGAAGAGACTAAAGGAAGAGGATAAATTGGTATAAAGCTATCCATG
CTAACCCCAAGAGCTCAGTGCTGTCAGGATATAGTCAGTATCCCCTAAAA
CAATCTGCCCACTGAATGCAGTGCCATCAAAATCCCAGTGGGGAGTAGAC
ATGGTAGCCCATACCTGTAATCCCCCATAGACAGAAGGCAGAGGCAGGAG
GACCATATAAGGTCAGCCTTGGCTACATAGTGAGACCATGTTGCAAAGGA
AN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_i24.b1 MSMg01no481_i24.b1 CHROMAT_FILE:
MSMg01no481_i24.b1 PHD_FILE: MSMg01no481_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:14 2005
         (575 letters)



>mm_chr10_60336743_60337717
          Length = 975

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctgggaggctattctggggaacaatctggtatcattttgttacattcctgaagggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcctgggaggctattctggggaacaatctggtatcattttgttacattcctgaagggtag 314

                                                                       
Query: 61  aaaccaaaatattgatgcaagcagataaggcaaggtagttctcggtgcaggatggaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaccaaaatattgatgcaagcagataaggcaaggtagttctcggtgcaggatggaggca 254

                                                                       
Query: 121 tctgagaggccatgcccaggaaaggagctgggagaggcatggtgagatgactttggtggt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctgaaaggccatgcccaggaaaggagctgggagaggcatggtgagatgactttggtggt 194

                                                                       
Query: 181 ttgaacgagaattgcctccacaggctcatatattggaatgcttagtcactagggagtgga 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 ttgaacgagaattgtctccacaggctcatatattggaatgcttagtcactagggagtgga 134

                                                                       
Query: 241 actatttcaaaggattataaggattgggaggtatggccttggaggaagtatgtcactggg 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 actatttcaaaggattagaaggattgggaggtatggccttggaggaagtatgtcactggg 74

                                                                       
Query: 301 ggatgggctttgaggtttcagaagccaagctctctctctctctctctctctctctctctc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 73  ggatgggctttgaggtttcagaagccatgctctctctctctctctctctctctctctctc 14

                    
Query: 361 tctctctct 369
           |||||||||
Sbjct: 13  tctctctct 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)