BAC Information

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BAC

Clone NameMSMg01-482A18
Chromosome10 (Build37)
Map Location 128,770,427 - 128,771,133
singlet/doubletsinglet
Overlap geneOlfr781
Upstream geneCs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780
Downstream geneOlfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482A18.T7 (MSMg01no482_a18.b1)MSMg01-482A18.TJ (MSMg01no482_a18.g1)
ACCAG562310AG562311
length764746
length of high quality
(start - end)		710 (49 - 758)621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no482_a18.b1 PHD_FILE: MSMg01no482_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005CHROMAT_FILE: MSMg01no482_a18.g1 PHD_FILE: MSMg01no482_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CGCTAGTAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGTATTCACATATCATTGATCATTTTTGTTGTGATGCAGC
TCCTCTCCTGAAAATCTCTTGTTCAGACACATGGCTGATAGAACAGATGG
TGATAGCTGGAGCTGTGTTGACATTCATCATCACCTTTGTGTGTGTTGTC
CTTTCCTATGTTTATATCATCAAGACCATTCTGAGATTTCCCTCTGCCAA
GCAAAGGAAAAAGGCCTTTTCCACCTGTTCTTCCCACATGATTGTTGTTT
CCATTACTTATGGTAGCTGCATCTTCATTTATGTCAAACCTTCATCCAAG
GACGATGTAGCTATCAATAAAGGGATTTCACTTCTTATCATATCAATTTC
ACCAATGATGAATCCCTTCATTTATGCACTGAGAAACAAGCAAGTAAAGC
AAGCTTTCAATTACTCAATTAAAAAAATTGCATTCCTCTCAAAGATGTAA
AATAATTAAAGAATAATAAATTTAAAGAAAAATGAATAAATGTAAATTCT
GAAGCTTTATTATAGTAATATTCTATCCTTGGGTTTTTTTTTTGGTCTTT
TTATACTCATACTTTCTTCTTAAACTTGCACACTATGGACATGACTTTAT
CTATCTTGATTCAAACCAAACTTTTTGAATATGTTTAGTCTTGCAGTCAA
CCTGAAATTGTTGTATGACTGTTATACCTAGAAACACAATATAGTTTCCA
CTTTTCCACACTTN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTAATCCACTTAGATTTGACCTT
AGTACAAGGAGACAGGAATGGATCAATTCGAATTCTTCTACATGATAACC
GCCAGTTGTCCCAGCACCATTTGTTGAAAATGCTGTTTCTTTTCCACTGG
ATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGTT
CATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTCCTTGTCTGTTGCTAT
ACCAGGACCTTGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGG
TCAGGCATGGTGATTCCAGAAGAGGTTCTTTTATCCTTGAGAAGAGTTTT
TGCTATCCTAGGTTTTTTGTTATTCCAGATGAATCTGCAGATTGCCCTTT
CTAATTCGTTGAAGAATTGAGTTGAAATTTTGATGGGGATTGCATTGAAT
CTGTAGATTGCTTTTGGCAAGATAGGCATTTTTACTACATTGATCCTGCC
AATCCATGAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTT
CTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCACTTCCTTA
GTTAGAGCCACGCCAAGGTATTTTATATTATTTGTGGCTATTGAGAAGGG
TGTTGTTTCCCTAATTTCTTTCTCAGCCTGTTTATCCTTTGTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_a18.b1 MSMg01no482_a18.b1 CHROMAT_FILE:
MSMg01no482_a18.b1 PHD_FILE: MSMg01no482_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:52 2005
         (710 letters)



>mm_chr10_128770224_128771332
          Length = 1109

 Score = 1330 bits (688), Expect = 0.0
 Identities = 703/708 (99%), Gaps = 2/708 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgtattcacatatcattgatcatttttgttgtgatgcagctcctctcctga 63
           ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtg-actcagatatcattgatcatttttgttgtgatgcagctcctctcctga 262

                                                                       
Query: 64  aaatctcttgttcagacacatggctgatagaacagatggtgatagctggagctgtgttga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaatctcttgttcagacacatggctgatagaacagatggtgatagctggagctgtgttga 322

                                                                       
Query: 124 cattcatcatcacctttgtgtgtgttgtcctttcctatgtttatatcatcaagaccattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cattcatcatcacctttgtgtgtgttgtcctttcctatgtttatatcatcaagaccattc 382

                                                                       
Query: 184 tgagatttccctctgccaagcaaaggaaaaaggccttttccacctgttcttcccacatga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagatttccctctgccaagcaaaggaaaaaggccttttccacctgttcttcccacatga 442

                                                                       
Query: 244 ttgttgtttccattacttatggtagctgcatcttcatttatgtcaaaccttcatccaagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgttgtttccattacttatggtagctgcatcttcatttatgtcaaaccttcatccaagg 502

                                                                       
Query: 304 acgatgtagctatcaataaagggatttcacttcttatcatatcaatttcaccaatgatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acgatgtagctatcaataaagggatttcacttcttatcatatcaatttcaccaatgatga 562

                                                                       
Query: 364 atcccttcatttatgcactgagaaacaagcaagtaaagcaagctttcaattactcaatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcccttcatttatgcactgagaaacaagcaagtaaagcaagctttcaattactcaatta 622

                                                                       
Query: 424 aaaaaattgcattcctctcaaagatgtaaaataattaaagaataataaatttaaagaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aaaaaattgcattcctctcaaagatgtaaaataattaaagaataataaatttaaagaaaa 682

                                                                       
Query: 484 atgaataaatgtaaattctgaagctttattatagtaatattctatccttggg-ttttttt 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 atgaataaatgtaaattctgaagctttattatagtaatattctatccttggggttttttt 742

                                                                       
Query: 543 tttggtctttttatactcatactttcttcttaaacttgcacactatggacatgactttat 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tttggtctttttatactcatactttcttcttaaacttgcacactatggacatgactttat 802

                                                                       
Query: 603 ctatcttgattcaaaccaaactttttgaatatgtttagtcttgcagtcaacctgaaattg 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctatcttgattcaaaccaaactttttgaatatgtttagtcttgcagtcaacctgaaattg 862

                                                           
Query: 663 ttgtatgactgttatacctagaaacacaatatagtttccacttttcca 710
           ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 863 ttgtatgactgttatccctagaaacacaatatagtttccacttttcca 910


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1109
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1099
Effective search space:   769300
Effective search space used:   769300
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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