Query= MSMg01no482_k13.b1 MSMg01no482_k13.b1 CHROMAT_FILE:
MSMg01no482_k13.b1 PHD_FILE: MSMg01no482_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:37 2005
(639 letters)
>mm_chr10_12319017_12320055
Length = 1039
Score = 982 bits (508), Expect = 0.0
Identities = 520/524 (99%)
Strand = Plus / Minus
Query: 1 cctattatgcttatttcgaagagcggaacagcttaataggaagccggtgaaggatttgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cctattatgcttatttcgaagagcggaacagcttaataggaagccggtgaaggatttgag 465
Query: 61 aaattatataataggaaccaaaatttcaggaactcacacatgtggttgagaatcaatact 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aaattatataatagaaaccaaaatttcaggaactcacacatgtggttgagaatcaatact 405
Query: 121 tcattagagaatttaatgattcagtggtttgctggtgccaaatgtcacccttactttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcattagagaatttaatgattcagtggtttgctggtgccaaatgtcacccttactttaaa 345
Query: 181 agccgtaggaacttgtagatgaatattctcaggagtgaggaccaaaggagacggctgttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 344 agccgtaggaacttgtagatgaatattctcaggagtgaggaccaaaggagacggctgtgc 285
Query: 241 ttttgttcttgtaggtgtttatttatttaaattctacatgtagacaataaaaggtgagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttttgttcttgtaggtgtttatttatttaaattctacatgtagacaataaaaggtgagga 225
Query: 301 gagtagaattttcttacagcattgaaatattattaaaatttaataactagaagtgaactt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gagtagaattttcttacagcattgaaatattattaaaatttaataactagaagtgaactt 165
Query: 361 gacagttttaaatttagcttcctctttggtttctttgttctgcttttatgtttgagacag 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gacatttttaaatttagcttcctctttggtttctttgttctgcttttatgtttgagacag 105
Query: 421 gaacttgctagagctcaggttggcttcacaatctcctggctcagcctccccagtgcttag 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gaacttgttagagctcaggttggcttcacaatctcctggctcagcctccccagtgcttag 45
Query: 481 agtatacacttggccttagcttttgcattttgtgtaaaatccat 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 agtatacacttggccttagcttttgcattttgtgtaaaatccat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no482_k13.g1 MSMg01no482_k13.g1 CHROMAT_FILE:
MSMg01no482_k13.g1 PHD_FILE: MSMg01no482_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:37 2005
(672 letters)
>mm_chr10_12273353_12274421
Length = 1069
Score = 1276 bits (660), Expect = 0.0
Identities = 668/672 (99%), Gaps = 3/672 (0%)
Strand = Plus / Plus
Query: 1 caataagctccatttggacaggaaacatgtaaagaaatgatggcagattcacgcattaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caataagctccatttggacaggaaacatgtaaagaaatgatggcagattcacgcattaag 260
Query: 61 gaacacagaaaagtggataggctggcaaataaatagtacacagagagaaataagccatat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 gaacacagaaaagtggataggctggcaaataaatagtgcacagagagaaataagccatat 320
Query: 121 gtgtatcttcaaaggggaggaggatgataaaagctttatttagtaataatctatggtaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtatcttcaaaggggaggaggatgataaaagctttatttagtaataatctatggtaaa 380
Query: 181 cggaacaatcaaatgatagaaataatggctatcactcagaaaaaatgtagaaatggacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggaacaatcaaatgatagaaataatggctatcactcagaaaaaatgtagaaatggacat 440
Query: 241 ggagagataaaatttatcttaaatctccttgatttaaattgaaaaacatttttttacctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagataaaatttatcttaaatctccttgatttaaattgaaaaacatttttttacctg 500
Query: 301 atcatgtaatattttttttcacacaaaatgaagtccactagaacactcccaagtaaacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcatgtaatattttttttcacacaaaatgaagtccactagaacactcccaagtaaacca 560
Query: 361 tgttcatccttttaggtcgctctccataccacaatggcagcatcattttacttgacagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcatccttttaggtcgctctccataccacaatggcagcatcattttacttgacagtt 620
Query: 421 aataacacagcacacaatctttccccccccccacctccctgaaagtctcagaagttttga 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 aataacacagcacacaatctttcccccccccc---tccctgaaagtctcagaagttttga 677
Query: 481 agtgccagatggtccaccattctaacaaatcagccctcaataaaaactggcctcagcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agtgccagatggtccaccattctaacaaatcagccctcaataaaaactggcctcagcaga 737
Query: 541 acagggtttacaaatggcaaacttttctaaaggccacaaggacaaagcccttttgttctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 acagggtttacaaatggcaaacttttctaaaggccacaaggacaaagcccttttgttctg 797
Query: 601 aaaagttactctgtaaccagcaacacctgcttatttaaatgataactgtgtctaaatagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaagttactctgtaaccagcaacacctgcttatttaaatgataactgtgtctaaatagg 857
Query: 661 caactatatcat 672
||||||||||||
Sbjct: 858 caactatatcat 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1069
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1059
Effective search space: 701058
Effective search space used: 701058
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
