BAC Information

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BAC

Clone NameMSMg01-483K19
Chromosome10 (Build37)
Map Location 100,244,675 - 100,245,319
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483K19.T7 (MSMg01no483_k19.b1)MSMg01-483K19.TJ (MSMg01no483_k19.g1)
ACCAG563547AG563548
length751747
length of high quality
(start - end)
645 (73 - 717)646 (82 - 727)
definitionCHROMAT_FILE: MSMg01no483_k19.b1 PHD_FILE: MSMg01no483_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:58 2005CHROMAT_FILE: MSMg01no483_k19.g1 PHD_FILE: MSMg01no483_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:04:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACTTTCCGAATACCGAATGGCTGAGAAGCACCTGAAA
AAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCA
GAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTTTGGAAATGAGTCTGGTGGTT
CCTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAATACCTCTCC
TGGGCTTATATCCAGAAGATGTCCCAACCGGTAAGAAGGTCACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATTGCCAGAAGCTGGAAAGAACC
CAAATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTT
GGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATC
ACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGTATACTAGCCCA
GAAACTTAGTATAGCGAGATATAAGGTACAATTTGCAAAACACATGAAAC
TGAAGAAGAAAGAAGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATT
N
NNAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGTATTCTGATTCT
TATAACCTTCTCTTCCTGCTTCTTCTGCTGTATTGTTCTTTTAGCAATAA
TTACAGAAGCTATGATATAGATGTATTTGTGAGGGATGAGCTTCATCCCA
TTTCCTGATGGCTGCACTGTTTCCAGTTGTGAGTATCTGTGATGGTCTTC
ATTTGGTACAAAATGAGGCTCTTTAGAGAGGGGAGGTAGCTAGCTACATT
ACCCAGCAAAGTTGACTTGTGTGGTGCATTTTCCTTTTTTTTTTTTCTAT
AACAATGATTCTAACTTGTGAAATGGCATTTTTAAGTAGTTTTTATTTGT
ATATCACAGATGATTAATAAAGGACATTTCCTCATTTTTTCCCTTAAGTC
ATTGATCACATATTAAATGTATTCTTTGGTATTTTATGTGCAACGGTATT
ACAGCTTAAGTGACTTAGAGGATTGAAGATCTATCAGAAGATGCACAGCT
TGATGCAATCCTCTGATATGAAACAAGCTTAGGATTTCCTAGGGACGGGG
AGAGAGCAATGTGCTGGCTTCTGTCTCACAGGTTTTGTTTTGAAAAACTT
ACAGCTGAAGGTTGTTATTGGTTTCACGCTATAGTTTGGGATTGTCAATG
CTGTTTCCTCTTGGTAACTGTCAAAAGAATAGTTTCTGAGAACAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_k19.g1 MSMg01no483_k19.g1 CHROMAT_FILE:
MSMg01no483_k19.g1 PHD_FILE: MSMg01no483_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:58 2005
         (646 letters)



>mm_chr10_100244475_100245519
          Length = 1045

 Score = 1234 bits (638), Expect = 0.0
 Identities = 644/646 (99%), Gaps = 1/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccagtattctgattcttataaccttctcttcctgcttcttctgctgtattgttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccagtattctgattcttataaccttctcttcctgcttcttctgctgtattgttcttt 260

                                                                       
Query: 61  tagcaataattacagaagctatgatatagatgtatttgtgagggatgagcttcatcccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcaataattacagaagctatgatatagatgtatttgtgagggatgagcttcatcccat 320

                                                                       
Query: 121 ttcctgatggctgcactgtttccagttgtgagtatctgtgatggtcttcatttggtacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctgatggctgcactgtttccagttgtgagtatctgtgatggtcttcatttggtacaa 380

                                                                       
Query: 181 aatgaggctctttagagaggggaggtagctagctacattacccagcaaagttgacttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaggctctttagagaggggaggtagctagctacattacccagcaaagttgacttgtg 440

                                                                       
Query: 241 tggtgcattttccttttttttttttctataacaatgattctaacttgtgaaatggcattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgcattttccttttttttttttctataacaatgattctaacttgtgaaatggcattt 500

                                                                       
Query: 301 ttaagtagtttttatttgtatatcacagatgattaataaaggacatttcctcattttttc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 t-aagtagtttttatttgtatatcacagatgattaataaaggacatttcctcattttttc 559

                                                                       
Query: 361 ccttaagtcattgatcacatattaaatgtattctttggtattttatgtgcaacggtatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccttaagtcattgatcacatattaaatgtattctttggtattttatgtgcaacggtatta 619

                                                                       
Query: 421 cagcttaagtgacttagaggattgaagatctatcagaagatgcacagcttgatgcaatcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagcttaagtgacttagaggattgaagatctatcagaagatgcacagcttgatgcaatcc 679

                                                                       
Query: 481 tctgatatgaaacaagcttaggatttcctagggacggggagagagcaatgtgctggcttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctgatatgaaacaagcttaggatttcctagggacggggagagagcaatgtgctggcttc 739

                                                                       
Query: 541 tgtctcacaggttttgttttgaaaaacttacagctgaaggttgttattggtttcacgcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtctcacaggttttgttttgaaaaacttacagctgaaggttgttattggtttcacgcta 799

                                                         
Query: 601 tagtttgggattgtcaatgctgtttcctcttggtaactgtcaaaag 646
           ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 800 tagtttgggattgtcgatgctgtttcctcttggtaactgtcaaaag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1045
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1035
Effective search space:   658260
Effective search space used:   658260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)