BAC Information

Click to search

BAC

Clone NameMSMg01-483P15
Chromosome10 (Build37)
Map Location 42,404,335 - 42,404,867
singlet/doubletsinglet
Overlap geneOstm1
Upstream geneEG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389
Downstream geneSec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483P15.T7 (MSMg01no483_p15.b1)MSMg01-483P15.TJ (MSMg01no483_p15.g1)
ACCAG563776AG563777
length1,337781
length of high quality
(start - end)		---649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no483_p15.b1 PHD_FILE: MSMg01no483_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:22 2005CHROMAT_FILE: MSMg01no483_p15.g1 PHD_FILE: MSMg01no483_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACACACACCCCCACACGCCGCGGCGTCTTTAACCCCCAGGAGGATTTCCC
CTCCAAGAGGATTTTCTAAGCTAGCCATCTCAATTTCTCTCCCTCCTTAG
CATCTTTATTTGTTTATGTTTACTGTATTTTGGAGGATATAGGACTGATC
AACGCAAGAGTATCCCGGTGTGTTAATAATTCATCCGATCACAGCACCCG
CCAGAAGAAGAACAGCCCAGGGTCTATATCCAATGACTAGGTGAAGACGC
GGCGAGGAGAATGTGGTCATTTATTTCGCCTTTACAATGCCTACTTGGAG
GGCCGAGAGAAAGAGCTCCGGCGCGCGTCGGCAATGTCTCCCTCTGTCGT
GTTGCGGCGAGTGTAAGATTAGATATGAGAGCCTCGCTGCCGCGAGAAAA
GAGTGCAATGCCTAATTCTGCAGAATCCTCCTCCGCTCCCCTCTTTATTT
AATATATTTTATATCTCTTTTTGCAGGCCGTTGCACGCGCATATCGAGTG
CCCGGATNTAATTTTACACACCCGATAACCACAATACCGTATATTTAATA
AAATAAGAACTCGTCCTGAGGACGTATTGTGTTTAATTCTTAGAAATAAT
AGCACACTGCTTTATGGAACCCCCGCCTACCCTCATTATCCCAATAAATT
TACATCACATTAATCCTACAGCACATATTACTACTGTTAGCAGAACCGCG
GAAAAGCCAAGCACGTGGTGTTGTTCCATACCTACATGGTATATATTTCA
TGTCGATGTTCCTTCACTCACTATCAGTGCGACCATAAAAACTTGTTATA
TTATACAGCCGGTACAGTAGTTCCGGGCCGCCAAGAATGGCTACACCAAC
GCGATATGATTATTGCTTACAGGTCTCGAAAAACCACCACCTCTACGCAT
GAACATTGAATGAACACGAATACCACACCTACGTAATTATCACGAGTCGC
TATGATGAAAATATTAATAAGATCGCACCCTCTGTTTATAGCTATGATCA
TCTCGAGAAGAGACATGACCGCGCGTTTGTCGTAATAGCTAATCACACAG
GTCGAAGAAGAGGTAGGTGGCGAATATACAAACAGCGCCTGATGCTGTTC
GATTGAAGTGACGATAGACACTACGAGTAATACTCTGTCTAATGTGTAGC
ATTATCATATACGCCCGCGTGCTTCTCCATCTCTATATATATTGATGAAG
ACAGAGACAGCGACANACCACACAGCACTCTTTATAATATCTCCAACCCT
CTCGTCTCTTGTTCACTGTGCAGTTAATANTATTCACCCACGTGTTCTGT
TACTCGAGCTCGACGCTCCGCGATCACACTTATCACN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCGAAGCCCACCAGGGTTAA
ATAATAAGAATCTGTCTCAAAAAAATAAAAATAAATTAAAAAAAACTTTA
AACCTGCTGCTACAGGTTCAAATCTAAAATATTCCTCTTTATATTAGCTC
ACGTGAACATCTGTTCCCTGGATATGTTCTAATGCTTAAAAAATATTTTT
TTGTGTTTCCAAAACACTTCAATCATACTTACAAAAGGAATTTTCACTCT
AAAACAGGAAAGTTTGGGGGTCATGGCATCTTTAAAAGGTGGGGCCTGCA
GACGGGCATGGTGGCACATGCCTTTCTTTAATACTAGCACTTGGGAGGCA
GAGGCAGGCAGATTTCTCAGTTAAGAAGCCAGCCTGGTCTACAGAGTGAG
TTCCAGGACAGCCAGGGCTACTCAGAGAAACCCTGTCTCGAAAACAAACA
AACAAACAAACAAACAAACCAAAAAAAGGTGGGGCCTGGCTGATGGAAGT
AGGTGTTGGCCTTTGAACAGGTGACAGCTGGACCTGGGTCCCTGCCTGTC
TGCAACCACATGATGGCATGTCTACATAATGACACGTCTACACTAACATG
ACATGTCTGTAGTCACATGACATGTCTGCAATCACACCATGAAATGTCTG
TAGTCACATGATAACATGTCTGCACTAACATGACATGTGTGCAATAACAT
AACATGTCTGCAGTCAAAGATGACATGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_p15.g1 MSMg01no483_p15.g1 CHROMAT_FILE:
MSMg01no483_p15.g1 PHD_FILE: MSMg01no483_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:22 2005
         (649 letters)



>mm_chr10_42404335_42405383
          Length = 1049

 Score =  862 bits (446), Expect = 0.0
 Identities = 518/552 (93%), Gaps = 24/552 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagccgaagcccaccagggttaaataataagaatctgtctcaaaaaaataaaaa--taa 58
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |  
Sbjct: 533 caagccgaagcccaccagggttaaataatgagaatctgtctcaaaaaaataaaaattt-- 476

                                                                       
Query: 59  attaaaaaaaactttaaacctgctgctacaggttcaaatctaaaatattcctctttatat 118
            ||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 475 -tt---aaaaactttaaacctgctgctacaggttcaaatctaaaatattcctc-ttatat 421

                                                                       
Query: 119 tagctcacgtgaacatctgttccctggatatgttctaatgcttaaaaaatatttttttgt 178
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 420 tagctcacgtgaacatctgttccctggatatgttctaatgctt-aaaaatatttttttgt 362

                                                                       
Query: 179 gtttccaaaa--cacttcaatcatacttacaaaaggaattttcactctaaaacaggaaag 236
           |||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttttcaaaactcacttcaatcatacttacaaaaggaattttcactctaaaacaggaaag 302

                                                                       
Query: 237 tttgggggtcatggcatctttaaaaggtggggcctgcagacgggcatggtggcacatgcc 296
           || ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct: 301 ttcgggggtcatggcacctttaaaaggtggggcctgcagacgggcatggtggcgcacgcc 242

                                                                       
Query: 297 tttctttaatactagcacttgggaggcagaggcaggcagatttctcagttaagaag-cca 355
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || |||
Sbjct: 241 tttctttaatactagcacttgggaggctgagacaggcagatttctcagttaag-agacca 183

                                                                       
Query: 356 gcctggtctacagagtgagttccaggacagccagggctactcagagaaaccctgtctcga 415
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcctggtctacagagtgagctccaggacagccagggctactcagagaaaccctgtctcga 123

                                                                       
Query: 416 aaacaaacaaacaaacaaacaaacaaaccaaaaaaaggtggggcctggctgatggaagta 475
           ||||||||||||||||||||          |||||||||| |||||||||||||||||||
Sbjct: 122 aaacaaacaaacaaacaaac----------aaaaaaggtgaggcctggctgatggaagta 73

                                                                       
Query: 476 ggtgttggcctttgaacaggtgacagctggacctgggtccctgcctgtctgcaaccacat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ggtgttggcctttgaacaggtgacagctggacctgggtccctgcctgtctgcaaccacat 13

                       
Query: 536 gatggcatgtct 547
           ||||||||||||
Sbjct: 12  gatggcatgtct 1



 Score =  143 bits (74), Expect = 3e-38
 Identities = 135/158 (85%), Gaps = 13/158 (8%)
 Strand = Plus / Minus

                                                                        
Query: 300  ctttaatactagcacttgggaggcagaggcaggcagatttctcagttaagaagccagcct 359
            ||||||| | |||||| ||||||||||||||||| | ||||| ||||  || ||||||||
Sbjct: 1040 ctttaatcccagcactcgggaggcagaggcaggcgggtttctgagtt-cgaggccagcct 982

                                                                        
Query: 360  ggtctacagagtgagttccaggacagccagggctact---cagagaaaccctgtctcgaa 416
            ||||||||||||||||||||||||||||||||||| |   ||||||||||||||||| ||
Sbjct: 981  ggtctacagagtgagttccaggacagccagggcta-tatacagagaaaccctgtctcaaa 923

                                                  
Query: 417  aa--caaacaaacaaacaaacaaacaaaccaaaaaaag 452
            ||  |||| ||| ||| ||| ||| |||  ||||||||
Sbjct: 922  aacccaaa-aaa-aaa-aaa-aaaaaaa--aaaaaaag 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |