BAC Information

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BAC

Clone NameMSMg01-484E03
Chromosome10 (Build37)
Map Location 29,232,562 - 29,363,081
singlet/doubletdoublet
Overlap geneRspo3, EG630389
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484E03.T7 (MSMg01no484_e03.b1)MSMg01-484E03.TJ (MSMg01no484_e03.g1)
ACCAG563990AG563991
length745710
length of high quality
(start - end)		690 (54 - 743)634 (77 - 710)
definitionCHROMAT_FILE: MSMg01no484_e03.b1 PHD_FILE: MSMg01no484_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:45 2005CHROMAT_FILE: MSMg01no484_e03.g1 PHD_FILE: MSMg01no484_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,362,553 - 29,363,081)(29,232,562 - 29,233,195)
sequence
NNNNNAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTGATTGCATGATTCAAGCAGCTGAAGGATGGCTGA
GAAAAATTACCCTGTGGAAAGATACAAAGTCAAGACAACACGGGCTAAAG
TGTGATGCCCAAGGGTCACCAGGAATATTTTATTTTGCTTTGATTTGGTT
TTTGTTTGTTTGCTTTAGCAGAAGGTTGTTGTGGAAAAGATTTGATCCAA
GCAGGGGAAATGAACCAAGATATAAGATACCATAAAATCAGAAAGAAAGG
TATTATGAAAAGTAAACTGAGGCAGGAGAGATGATGTGGTTTTAAGGCCA
GTCTGGGGAATTCAGTGAGCATCCTGCTAGCCAGGGATATGTAACAAGAC
CCTGCCATAAAAAAGAAGCCACCACCACCAAAAAGAAAGAAAAGGTCTTT
GATACATACAGTTGTTACGTTGTAACATCAGTGGTGGCATTGGCCAGAGA
AGTTCAAGGAGGAGATCTGGATAGAGAATAACATAGTGCTCTCAAGAATA
AGTAAAAACCTGAAGGAGTAAAATCAATAGCTCAAAATGTGTTGCAAGAA
CTAAGAACTAAATACTTGAATATGTGGAGACCTTAGGATACATTCATGAA
ATTAGTCCATGTTGACTGGCCTCAGAAAATTCAAACTTTAGTATATATTT
AAAATAAAAACTGTAAGAAGTAGAACATTACCTAAATAAAAATAN

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAAATTTGGTAAATATCACTTTA
GCCAAAAAAATAAAGAAACAAGCAAACAAAAACATAGCCCTAACCCTGGC
AGGGGCCTTAGAGAAAGGAGAAGGAGAAAAGACTTCATATTCACTTCAGA
TTTCTCTCCCTTTTTGCACTTGTTCACACTTAATGTTCCTCAACTTAAGG
AGTTTATTTGGTCTGATAATTTCTTGGTAGTCTCTTTGATAATTTCTGGC
ATCTATAGAGAGTGACCATTTATTGCATTGATTTTTAATAATGAGTATGA
TTGAAGAATGAATGACACCCATAATATAAAAAGGCTGTGTAATTGTGTTT
TTTAATGCAAGTGTTAAACTGATATTTAACAGAAAGCTAAACAAAAAAGG
TTTTTCTAGATGTCTTTTAGTAGTCTCTTTATCTAGAAGTTTTTTGTTTA
ATCTTGACTAAGTTAGGAAATGTATTTCTACACAATCAAGTCCCCAAAAG
ACTGTGGCAGCAGGTCTCCTTGTGTTATTATACAGTGACATTATGGTAAC
TGAAAATTTAGGGATGATTGATTCACGGTTCCTTGAAGATCAAGTGTTAA
AAAATAGAATTACTGGATAGTCTCTTACACATTTTTTGGTGAACACAAAA
GAAAATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_e03.b1 MSMg01no484_e03.b1 CHROMAT_FILE:
MSMg01no484_e03.b1 PHD_FILE: MSMg01no484_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:45 2005
         (690 letters)



>mm_chr10_29361992_29363081
          Length = 1090

 Score =  953 bits (493), Expect = 0.0
 Identities = 520/529 (98%)
 Strand = Plus / Minus

                                                                        
Query: 159  gctttagcagaaggttgttgtggaaaagatttgatccaagcaggggaaatgaaccaagat 218
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 gctttagcaaaaggttgttgtggaaaagatttgatccaagcaggggaaatgaaccaagat 1031

                                                                        
Query: 219  ataagataccataaaatcagaaagaaaggtattatgaaaagtaaactgaggcaggagaga 278
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 ataagataccataaaatcagaaagaaaggtattatgaaaagtaaactgaggcaggagaga 971

                                                                        
Query: 279  tgatgtggttttaaggccagtctggggaattcagtgagcatcctgctagccagggatatg 338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  tgatgtggttttaaggccagtctggggaattcagtgagcatcctgctagccagggatatg 911

                                                                        
Query: 339  taacaagaccctgccataaaaaagaagccaccaccaccaaaaagaaagaaaaggtctttg 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  taacaagaccctgccataaaaaagaagccaccaccaccaaaaagaaagaaaaggtctttg 851

                                                                        
Query: 399  atacatacagttgttacgttgtaacatcagtggtggcattggccagagaagttcaaggag 458
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 850  atacatacagttgttacgttgtaacatcagtggtggcattggccaaagaagttcaaggag 791

                                                                        
Query: 459  gagatctggatagagaataacatagtgctctcaagaataagtaaaaacctgaaggagtaa 518
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  gagatctgggtagagaataacatagtgctctcaagaataagtaaaaacctgaaggagtaa 731

                                                                        
Query: 519  aatcaatagctcaaaatgtgttgcaagaactaagaactaaatacttgaatatgtggagac 578
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||
Sbjct: 730  aatcaatagctcaaaatgtgttgcaagaacttagaactaaatacttgaatatgtcaagac 671

                                                                        
Query: 579  cttaggatacattcatgaaattagtccatgttgactggcctcagaaaattcaaactttag 638
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 670  cttaggatacattcatgaaattagtccatgttgacttgcctcagaaaattcaaactttag 611

                                                             
Query: 639  tatatatttaaaataaaaactgtaagaagtagaacattacctaaataaa 687
            |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 610  tatatatttataataaaaactgtaagaagtggaacattacctaaataaa 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no484_e03.g1 MSMg01no484_e03.g1 CHROMAT_FILE:
MSMg01no484_e03.g1 PHD_FILE: MSMg01no484_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:45 2005
         (634 letters)



>mm_chr10_29232362_29233395
          Length = 1034

 Score = 1187 bits (614), Expect = 0.0
 Identities = 629/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaatttggtaaatatcactttagccaaaaaaataaagaaacaagcaaacaaaaacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaatttggtaaatatcactttagccaaaaaaataaagaaacaagcaaacaaaaacata 260

                                                                       
Query: 61  gccctaaccctggcaggggccttagagaaaggagaaggagaaaagacttcatattcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctaaccctggcaggggccttagagaaaggagaaggagaaaagacttcatattcactt 320

                                                                       
Query: 121 cagatttctctccctttttgcacttgttcacacttaatgttcctcaacttaaggagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cagatttctctccctttttgcacttgttcacacttaatgttcctcaatttaaggagttta 380

                                                                       
Query: 181 tttggtctgataatttcttggtagtctctttgataatttctggcatctatagagagtgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tttggtctgataatttcttggtagtctctttgataatttctggcatctatacagagtgac 440

                                                                       
Query: 241 catttattgcattgatttttaataatgagtatgattgaagaatgaatgacacccataata 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 catttattgcattgatttttaataatcagtatgattgaagaatgaatgacacccataata 500

                                                                       
Query: 301 taaaaaggctgtgtaattgtgttttttaatgcaagtgttaaactgatatttaacagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaaggctgtgtaattgtgttttttaatgcaagtgttaaactgatatttaacagaaag 560

                                                                       
Query: 361 ctaaacaaaaaaggtttttctagatgtcttttagtagtctctttatctagaagttttttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaacaaaaaaggtttttctagatgtcttttagtagtctctttatctagaagttttttg 620

                                                                       
Query: 421 tttaatcttgactaagttaggaaatgtatttctacacaatcaagtccccaaaagactgtg 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaatcttgactaagtaaggaaatgtatttctacacaatcaagtccccaaaagactgtg 680

                                                                       
Query: 481 gcagcaggtctccttgtgttattatacagtgacattatggtaactgaaaatttagggatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcagcaggtctccttgtgttattatacagtgacattatggtaactgaaaatttagggatg 740

                                                                       
Query: 541 attgattcacggttccttgaagatcaagtgttaaaaaatagaattactggatagtctctt 600
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attgattcacagttccttgaagatcaagtgttaaaaaatagaattactggatagtctctt 800

                                             
Query: 601 acacattttttggtgaacacaaaagaaaatattg 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 acacattttttggtgaacacaaaagaaaatattg 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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