BAC Information

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BAC

Clone NameMSMg01-484F01
Chromosome10 (Build37)
Map Location 103,164,517 - 103,165,047
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484F01.T7 (MSMg01no484_f01.b1)MSMg01-484F01.TJ (MSMg01no484_f01.g1)
ACCAG564033AG564034
length736696
length of high quality
(start - end)		684 (53 - 736)611 (77 - 687)
definitionCHROMAT_FILE: MSMg01no484_f01.b1 PHD_FILE: MSMg01no484_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:50 2005CHROMAT_FILE: MSMg01no484_f01.g1 PHD_FILE: MSMg01no484_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTTTTCCTGGTGTCTCTTCACAGCAATAGAGCACTGA
CAAAGACAATAGTCTTTCACAGTCTCAATGTTATTAAAAGATTCAAAGTC
TTTTAACAACACGATGATATGTTAACTGTAACCCTCCTGTAAAATTGAAA
TACAAATTAGATACAATGGCACACTGCAAGCTTATTTGGATATTCTGCTC
TACTTTCTCTCCCCCTCTCTCTCTCCCTTCTTTCCTTCCCCTTCCTTCCT
TCCTTCCTTCCTTTCTTCCTTCCTTCCTTTTTACTCCCTTGCTTTTTTCT
TTTTCTTTAGCTGTAATGAATACTATGAGCCAAAACACTTTGGGAAGGGA
AAGGTTAATCTGGTTTATACCTACACATCACACTCCATCCTTGAGAGAAG
TCAGGATATGAATTCAGTCAGCTAATATGGAGTCAGAAAATGAAGCAGAG
ACCATGGTGAAATGCCGTAAACTGGCTCAATACCCCCTGGCTTGCTGAGA
CATTTCTTATATAACCTTTACTCACTAACCCAGGAAATGTTCTGCTCACA
GTTGGGCTAGGTCTTCCAACATCAATCAACAGGAAGAAAACACCCCACAG
ACATGTCCAGAGTCCAATTTGACACACACGATTCATTGATTCATTTTCTC
TCTTCCTAGATATGTCTAGGTGTATATAACATTGAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTATGAAATAACAAAACAGCTA
CTTTGAAACTAAATAAAAAATGAAGTTTGCATTTAAGAAAATAATGATGA
GAACATTTGTCTTCATATCACAGTTATGTGACTGTCCCTCATTCTTAGGC
TTACACTTTGGTAAAACTCTACATTATGGTTCCATCTATTTTGTGTTGCT
AGTATAGGCATGCACACACACACACAAACACACAAATGCACATGTACACA
GGCCCATGTATGTATTCACATGTGCAAAAACATACACACATACACAGACA
CACACAAAAGGACATGCACACATCCATGTACATTCTTGAACAAAAGGTTG
CTCTTAAAATACATCATATTAGTTTAGAGTAGCTTAGATTTGATTCCAAA
TAAATCCTCTATAACATCTTCCAGAGGCAAAACAATGATAAATATCTTTT
GTTTCTGTCACTTCATCTATCACTAAAGAAATATAAATGTTGGAGAGATT
CTCAAACAATGTTGATAAATGAGGCAAATACTGAGCGTTCAAATTCAAAA
GTCAATATTTATCTTGAGCAACAATACATGCTAGTACTCCTTCAAGCAAG
AAACCAATATAACCTGCATCTATGACCTCATATATCAGTTTAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_f01.g1 MSMg01no484_f01.g1 CHROMAT_FILE:
MSMg01no484_f01.g1 PHD_FILE: MSMg01no484_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:50 2005
         (611 letters)



>mm_chr10_103164037_103165047
          Length = 1011

 Score =  965 bits (499), Expect = 0.0
 Identities = 525/537 (97%), Gaps = 6/537 (1%)
 Strand = Plus / Minus

                                                                        
Query: 75   gaacatttgtcttcatatcacagttatgtgactgtccctcattcttaggcttacactttg 134
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1011 gaacatttgtcttcatatcacagttatgtgactttccctcattcttaggcttacactttg 952

                                                                        
Query: 135  gtaaaactctacattatggttccatctattttgtgttgctagtataggcatgcacacaca 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  gtaaaactctacattatggttccatctattttgtgttgctagtataggcatgcacacaca 892

                                                                        
Query: 195  cacacaaacacacaaatgcacatgtacacaggcccatgtatgtattcacatgtgcaaaaa 254
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 891  cacacaaacacacaaatgcacatgtacacaggcccatgtatgcatgcacatgtgcaaaaa 832

                                                                        
Query: 255  catacacacatacacagacacacacaaaaggacatgcacacatccatgtacattcttgaa 314
            |||||||||||      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  catacacacat------acacacacaaaaggacatgcacacatccatgtacattcttgaa 778

                                                                        
Query: 315  caaaaggttgctcttaaaatacatcatattagtttagagtagcttagatttgattccaaa 374
            ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 777  caaaaggttgctcttaaaatacatcatattagtttagagtaccttagattttattccaaa 718

                                                                        
Query: 375  taaatcctctataacatcttccagaggcaaaacaatgataaatatcttttgtttctgtca 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  taaatcctctataacatcttccagaggcaaaacaatgataaatatcttttgtttctgtca 658

                                                                        
Query: 435  cttcatctatcactaaagaaatataaatgttggagagattctcaaacaatgttgataaat 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  cttcatctatcactaaagaaatataaatgttggagagattctcaaacaatgttgataaat 598

                                                                        
Query: 495  gaggcaaatactgagcgttcaaattcaaaagtcaatatttatcttgagcaacaatacatg 554
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 597  gaggcaaatactgagcgttcaaattcaaaagtcaatatttaccttgagcaacaatacatg 538

                                                                     
Query: 555  ctagtactccttcaagcaagaaaccaatataacctgcatctatgacctcatatatca 611
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  ctagtactccttcaagcaagaaaccaatataacctgcatctatgacctcatatatca 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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