BAC Information

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BAC

Clone NameMSMg01-484P07
Chromosome10 (Build37)
Map Location 53,712,966 - 53,713,376
singlet/doubletsinglet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484P07.T7 (MSMg01no484_p07.b1)MSMg01-484P07.TJ (MSMg01no484_p07.g1)
ACCAG564516AG564517
length716734
length of high quality
(start - end)
547 (80 - 626)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no484_p07.b1 PHD_FILE: MSMg01no484_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:42 2005CHROMAT_FILE: MSMg01no484_p07.g1 PHD_FILE: MSMg01no484_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCCACACTTATAATTGCGGCGCTAAACGACTCCAATCGAAACAGGAC
CGNNGGAATCTGCTTACAACCACCTGGNCCTGGACTTTTCGGTTGGGAGG
TTTTTAATGACTATTTATATTTCCTTAGGAGTTATGGGGCTATTAAGATA
GTTATCAGGTCTTGAGTTAACTTTGGTAAGTGGTACCTTTCTAGAAAATC
ATCCATTTCATCTAGATTTTCCAGTTTTGTTGAGTATAGGTGTTTGTAGT
AAGTTCTGATGACTTTTGAATTTTCCAATTTTTGTTGTCATGTCTCCCTT
TTTCATTTCCAATTTTGTTTATTTGCATAGTGTCTCTGTACCCTTTAGTT
AGTTTAGCTGAGGGTTTATCTATCTTGTTGATTTTTTTCAAAGAACCAGG
TCTTGGTTTTGTTGATTCTTTCTATTCTGTTTCTACTTTGTCGTCCAGCC
CTGAGTTAGACTATTTCCTGCTGTCTACTCCTTTTAGGTGTGCTTTTCTG
TTCTAGAGCTTTCAGAAGTGCTATTAAGTTGCTAGTATAGGATCTCTCCA
ATCTTTTTATGAAGGCATTCAGTGCTATGAATTTTTCTCTTAGCACTGTT
TTCACTGTGTCCCATAAGTTTGGATGGATGGTGTCTTCATTATATAAAGT
CTTTGATTTCTTTCTTTATTTCTTCCCTGATCCAATTATCATTGAGTAGA
GAGTTGTTCAATTTCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAAAGAACAAGAAGGAGTTAT
GGTTGGGATAGGGCCACTAGAATTTCCTGGGATTTATTTTGGATCTCTTG
TCAGTCTGTCTGAGAACTTTGTTTATTAATTTTATGCATGTAAATCAAGT
TTATGTATATATGTCTACTTTGATGTACATAAATCACATTATAGTTCAGA
TCTAAAGCTTAATCCAAATATAATGTGTGTGTATGTATATATACATACAT
ACATATACATACATACATAAATATAAAACATATGTGTATAAGTTATTCAG
TGGATACAAATTTTTAGCTTTTGTAGGTAAATGCCAAAAAGAATGACAGC
CAACTTTATATGCTAAGATTATGTTTAGTTTTATAAAACATTATCAAACC
ATCTGCCAAAGTATCTGTATCATTAGAGGCCCAATATCTATAAATATGGG
TTGATAACAAGGCATTCAGTATGCTCAGTGCTGTAGATTCAGGCCATTCT
GATCAGTATGCATTGGTATCTTGGGTAGTTGTTTTAATTGCTATCGTTCT
GATGATGTGAGGAGAATCTTTTTATTTGCCTATTTGTCATTCCTCTTTCT
ACTCTGTTGACATTGTCTATGAAGGCCTTTGTCCCACTTGTGAAATCAGG
ATTTTTTGTTGGGTTATTGTGCCATAAATTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_p07.g1 MSMg01no484_p07.g1 CHROMAT_FILE:
MSMg01no484_p07.g1 PHD_FILE: MSMg01no484_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:42 2005
         (618 letters)



>mm_chr10_53712966_53713983
          Length = 1018

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtaaagaacaagaaggagttatggttgggatagggccactagaatttcctgggattt 60
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 411 tctgtaaagaacaagaaggaattatggttgggatagggccactagaagttcctgggattt 352

                                                                       
Query: 61  attttggatctcttgtcagtctgtctgagaactttgtttattaattttatgcatgtaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 351 attttggatctcttgtcagtctgtctgagaactttgtttattaattttatgcatataaat 292

                                                                       
Query: 121 caagtttatgtatatatgtctactttgatgtacataaatcacattatagttcagatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caagtttatgtatatatgtctactttgatgtacataaatcacattatagttcagatctaa 232

                                                                       
Query: 181 agcttaatccaaatataatgtgtgtgtatgtatatatacatacatacatatacatacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agcttaatccaaatataatgtgtgtgtatgtatatatacatacatacatatacatacata 172

                                                                       
Query: 241 cataaatataaaacatatgtgtataagttattcagtggatacaaatttttagcttttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cataaatataaaacatatgtgtataagttattcagtggatacaaatttttagcttttgta 112

                                                                       
Query: 301 ggtaaatgccaaaaagaatgacagccaactttatatgctaagattatgtttagttttata 360
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 111 ggtaaatgccaaatagaatgacagccaagtttatatgctaagattatgtttagttttata 52

                                                              
Query: 361 aaacattatcaaaccatctgccaaagtatctgtatcattagaggcccaata 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  aaacattatcaaaccatctgccaaagtatctgtatcattagaggcccaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)