Query= MSMg01no485_j16.b1 MSMg01no485_j16.b1 CHROMAT_FILE:
MSMg01no485_j16.b1 PHD_FILE: MSMg01no485_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:36 2005
(669 letters)
>mm_chr10_106851360_106852427
Length = 1068
Score = 1100 bits (569), Expect = 0.0
Identities = 641/665 (96%), Gaps = 5/665 (0%)
Strand = Plus / Minus
Query: 4 gaattcaccataaattccctgggtgacatgcctttggtaagtcttgattgttcttcacat 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcaccataaaatccatgggtgacatgcctttggtaagtcttgattgttcttcacat 806
Query: 64 gatcactaccatttaatctcaagggggtaggcactgtgctgtacagtagctctcttgatg 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gatcattaccatttaatctcaagggggtaggcactgtgctgtacagtagctctcttgatg 746
Query: 124 ggcatagatacaaaggtcatgttcaatcgaacataactctaccacatcctatgtacacaa 183
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 745 ggcatagatacaaaggtcatgttcaagcgaacataactctaccacatcctacgtacacaa 686
Query: 184 caagataggacaggttttttttctgattaaatatgtaagtcttggtaataggctatagga 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 685 caagataggacaggttttttttctgattaaatatgtaagtcttggtaatgggccatagga 626
Query: 244 aatcctgaggtgacttaatgaagactgaacaggtaatagaaatacaaatggctacatatg 303
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 625 aatcctgaggtgacttaatgaagactgaacagggaatagaaatacaaaaggctacatatg 566
Query: 304 accaaactgtgtatttccaaagataatgggaggagtaaaacatggcagttttcagtgagg 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 accaaattgtgtatttccaaagataatgggaggagtaaaacatggcagttttcagtgagg 506
Query: 364 tctaagagatcaacctgttgctttcaaactacccctgagcacatttactcagggctaatg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctaagagatcaacctgttgctttcaaactacccctgagcacatttactcagggctaatg 446
Query: 424 tcataaatcattctggagaagaggaatgaatagcttgtattaccagggatggaagaaaca 483
|||||||| ||||||||||||||| |||||||||||| |||||||||||||||| |||||
Sbjct: 445 tcataaataattctggagaagagggatgaatagcttgcattaccagggatggaataaaca 386
Query: 484 atagtactagcagaaagaatattaggtg-tacatcagagatttccccctattgtccaaag 542
|||||||||||||||||||||||||| | |||||||||||||||||| |||| |||| ||
Sbjct: 385 atagtactagcagaaagaatattagg-gatacatcagagatttcccc-tattatccagag 328
Query: 543 gacttttgttaggatgctggtggtacagaataggtaactaaggagaaggctttaggctaa 602
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gacttttgttaggatgcttgtggtacagaataggtaactaaggagaaggctttaggctaa 268
Query: 603 gtgacttgcctattaatggtatctattaatggtgtctgtcccaactat-atcattctatt 661
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 267 atgacttgcctattaatggtatctattaatggtgtctgtcccaacc-tcatcattctatt 209
Query: 662 ctaag 666
|||||
Sbjct: 208 ctaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_j16.g1 MSMg01no485_j16.g1 CHROMAT_FILE:
MSMg01no485_j16.g1 PHD_FILE: MSMg01no485_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:37 2005
(645 letters)
>mm_chr10_106719001_106720045
Length = 1045
Score = 1170 bits (605), Expect = 0.0
Identities = 635/645 (98%)
Strand = Plus / Plus
Query: 1 agggcacagtaaaaaaggagaggaatagatcagaaaggatgtggagtggtcggtagcaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcacagtaaaaaaggagaggaatagatcagaaaggatgtggagtggtcggtagcaat 260
Query: 61 acctgtcttaaggatgcaaggaatggcagatagccaacaccatgtagactgtaaatgggc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgtcttaaggatgcaaggaatgacagatagccaacaccatgtagactgtaaatgggc 320
Query: 121 accgcaatactattttccttccattcctttgtcttctccatcatttcaaaagtactatgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accgcaatactattttccttccattcctttgtcttctccatcatttcaaaagtactatgt 380
Query: 181 tgctctaggaagcaacaggatgctggtcagagatgtcctgcctacatttaattgctagct 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgctctaggaagcaacaggatgctggtcagagatgtactgcctacatttaattgctagct 440
Query: 241 tttcttttttctgtaacattcacagaagtttcttaactgttttgagttccagttttccaa 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctgctttctgtaacattcacagaagtttcttaactgttttgagttccagttttccaa 500
Query: 301 tctgtaaagtacaagttgtaaaaccagcataatgtcaaagatgtacatttgttgattttc 360
||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 tctgtaaagtacaagttataaaaccagcataatatcaaagatgtagatttgttgattttc 560
Query: 361 atatcctaacatgtataaagtgctcagactaggtctgacatatagtaatcattcaatggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatcctaacatgtataaagtgctcagactaggtctgacatatagtaatcattcaatggc 620
Query: 421 tgtcattgtttctttcctgagccctgcatgtagtatgaccccaatgcacagggcaagaat 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 tgtcattgtttctttcctgagccctgcatgtagtatgatcccaatgcacagggcaagaat 680
Query: 481 agagaatacttcctttattgtgttacatgaagaggctggaaccacacttagatttgggat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 681 agagaatacttcctttattgtgttacatgaagaggctggaaccacacttagatttcggat 740
Query: 541 tcaaaagatgaggaagttgttgaaaatgcttagcaactcaaagtgttttctgtgtatgta 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 741 tcaaaagatgaggaagttgttgaaaatgcttagtaactcaaagtgttttctgtgtatgta 800
Query: 601 acttgttgtgtacatacatgctccctaagttgtccacttggtgat 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acttgttgtgtacatacatgctccctaagttgtccacttggtgat 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
