BAC Information

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BAC

Clone NameMSMg01-485K11
Chromosome10 (Build37)
Map Location 90,343,671 - 90,343,901
singlet/doubletsinglet
Overlap geneAnks1b
Upstream geneLOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485K11.T7 (MSMg01no485_k11.b1)MSMg01-485K11.TJ (MSMg01no485_k11.g1)
ACCAG565047AG565048
length719730
length of high quality
(start - end)
235 (330 - 564)593 (81 - 673)
definitionCHROMAT_FILE: MSMg01no485_k11.b1 PHD_FILE: MSMg01no485_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:41 2005CHROMAT_FILE: MSMg01no485_k11.g1 PHD_FILE: MSMg01no485_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGGACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGGCGCGGAATTCCAGATTTTTCTCAAGAGTGCCACTACCTTTTCCTGGC
CAAAGCCTGCCATTTTGGCAGGGAACAGTTTGTAAGGTGATATGCAGAGA
AAGACAGATCGACAGACTCATTTCTGTGGTGTTTTATTTGTGGGTAAACT
TGGGAGGATTCAGAACAGACTGTAGTATTCCTATGATCACACAGAAAGTG
TCAGTCATCAGACAAGCACCCAGTTTACGGGGTACATGAGTCTCTCAGGG
AAGCAACAACTTTTGAGCATATTTTTTACAGGAGGGGGGAAGCACAGTGC
TAGTTATTTCTTTAAAACTGTCTCCCTTGGGCCCCACGGAATGCTGGGAG
AATGTCAGCTGTGTACCACGAGGAATAGGAAGAGTGCTCATTCTGAAAAT
CAGAACCTTGGACAGCAACACCCTGCCGTAGCCCTGGGCTCCTGAGGATA
AATGTCTCCTTTCCCTTCCCCAAGTGTCAGACCATTAGCAGCCTCATCAG
GCTGAAGTAATGATGTAAACAAGATGTCTTATAAAATCACCTATGTCTAT
GACCCTTGCGTTTGTACTTTCCTCTAAGCCTCTTTGTGTGCCCTACAGGA
AACCAGGCATTTCTTTACATTGTTGGCAGAGACCTACCCTTCCCGTTTCC
CATCCTGCCCTGGGTGACN
GGGGNCACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAGATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACATGAAACTCAAGAAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_k11.b1 MSMg01no485_k11.b1 CHROMAT_FILE:
MSMg01no485_k11.b1 PHD_FILE: MSMg01no485_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:41 2005
         (235 letters)



>mm_chr10_90343467_90344101
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 229/231 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggggggaagcacagtgctagttatttctttaaaactgtctcccttgggccccacggaatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggggggaagcacagtgctagttatttctttaaaactgtctcccttgggccccacggaatg 264

                                                                       
Query: 65  ctgggagaatgtcagctgtgtaccacgaggaataggaagagtgctcattctgaaaatcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgggagaatgtcagctgtgtaccacgaggaataggaagagtgctcattctgaaaatcag 324

                                                                       
Query: 125 aaccttggacagcaacaccctgccgtagccctgggctcctgaggataaatgtctcctttc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 aaccttggacagcaacaccctgccgtagccctgggctcctgaggataaatgtctccattc 384

                                                              
Query: 185 ccttccccaagtgtcagaccattagcagcctcatcaggctgaagtaatgat 235
           |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 ccttccccaagtgtcagatcattagcagcctcatcaggctgaagtaatgat 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)