BAC Information

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BAC

Clone NameMSMg01-485P10
Chromosome10 (Build37)
Map Location 37,516,373 - 37,516,960
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485P10.T7 (MSMg01no485_p10.b1)MSMg01-485P10.TJ (MSMg01no485_p10.g1)
ACCAG565282AG565283
length734747
length of high quality
(start - end)
659 (50 - 708)610 (82 - 691)
definitionCHROMAT_FILE: MSMg01no485_p10.b1 PHD_FILE: MSMg01no485_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:07 2005CHROMAT_FILE: MSMg01no485_p10.g1 PHD_FILE: MSMg01no485_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCAATGAGATGACTGGAGAGTGGCCAGAAGATGGGCATGGA
GTTGGGAATTGAACTATAAATACACAAACAGAAGCAGGAAGAAATGGCAC
ATTGGTGGTTTCTACAAAAGCAAACTACAAGAATGCATATAGGCCTAGGA
TCCAGGGAAGGCAGTATGCTAATAAGAAGCTTACTATTAAATAGAATTCA
ATATCTATTCTGAACAAATGTATTCCATGATCTTTTGAGAAATATCAGAA
AAAATGCTAAAGTTTGATTTGTTTTATATTTGTTTAAGTAAAAATTTGAC
TCAAGGTCATGGAATAGGAAAATGGTCACTGCTATTTAGATAGGCGTTGT
TGCAAGCAGTTGGGTAGGAGGAAGAAGATAGAAAAGGGAGAAAAAAGTAA
CATATTGGAAAATCTAAAAAACAATTTCATAAAACAAAGCTGATGAGTTA
GAGAAAACAGCCTGTGCATCTCCTCAGCTTGCTTTTTTCAGACCCCCAAC
AGGAGGAAGTAATTCTGCTCTCTAAGGGTTGGAAAGTGGAATACTTTCAA
TTAGAATGAAGCCTTAGGTCTGTTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT
CTCTCTCTCTCTCTCTCCCTTTTTGTGTGGGGGT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGAT
CTTGGGAATCTCTTTCTTTAGGTTAGGGAAGTTTTCTTTTATAATTTCAT
TGGAGATGTTTACTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTATA
CCTATTATCCTTAGATTTGGTCTTCTCATTGTGTCCTGGACTTCCGGGAT
GTTTTGAGTTATAATCTTTTTGCATTTTCTTTGATTGTTGAGTCAATATT
TTCTATGGTATCTTCTGTACCTGAGATTCTCATTTCTCTCTTGTATTCTG
TTGGTGGTGCTTACATCTATGGCTTCTGACTTCTTTTCCAGGTTTTCTAT
CTCCAGAGTTGTCTCCCTTTGTGATTTCTTTATTGTTTCTACTTCCAGTT
TTAGACCCTGGATAGTTTTGTTCAATTCTTTCACCTGTTTTGATTTGTTT
TCCTGTAATTCTTTAAGGGATTTTTGTGTTTCCTTTAAAAGGGCTTCTGC
CTTTTTACTTATGTTCTCCTGTATTTCTTTAAGGGAGTTATTTATATTCT
TCTTATAGTTCTCCATCATCATCATGAGAAGTGACTTTAGATCCAGATCT
TGCTTTTATGGTGTGATGTTGTATCCAGGACTTGCTATGGTGGGAGAGTT
GGGTTCTGATGATGCCAAGTAACCTTGGTTTCTGTTGCTTCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_p10.b1 MSMg01no485_p10.b1 CHROMAT_FILE:
MSMg01no485_p10.b1 PHD_FILE: MSMg01no485_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:07 2005
         (659 letters)



>mm_chr10_37516168_37517226
          Length = 1059

 Score = 1122 bits (580), Expect = 0.0
 Identities = 586/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcaatgagatgactggagagtggccagaagatgggcatggagttgggaattgaac 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaatgagatgactggagagtggccagaagatgggcatggagttgggaattgaac 265

                                                                       
Query: 66  tataaatacacaaacagaagcaggaagaaatggcacattggtggtttctacaaaagcaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tataaatacacaaacagaagcaggaagaaatggcacattggtggtttctacaaaagcaaa 325

                                                                       
Query: 126 ctacaagaatgcatataggcctaggatccagggaaggcagtatgctaataagaagcttac 185
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 326 ctacaagaatgcatataggcctaggatccagggaaggcagtatgctattaagaagcttac 385

                                                                       
Query: 186 tattaaatagaattcaatatctattctgaacaaatgtattccatgatcttttgagaaata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tattaaatagaattcaatatctattctgaacaaatgtattccatgatcttttgagaaata 445

                                                                       
Query: 246 tcagaaaaaatgctaaagtttgatttgttttatatttgtttaagtaaaaatttgactcaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 446 tcagaaaaaatgctaaagtttgatttgttttatatttgtttaagtaaaaatttgattcaa 505

                                                                       
Query: 306 ggtcatggaataggaaaatggtcactgctatttagataggcgttgttgcaagcagttggg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtcatggaataggaaaatggtcactgctatttagataggcgttgttgcaagcagttggg 565

                                                                       
Query: 366 taggaggaagaagatagaaaagggagaaaaaagtaacatattggaaaatctaaaaaacaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taggaggaagaagatagaaaagggagaaaaaagtaacatattggaaaatctaaaaaacaa 625

                                                                       
Query: 426 tttcataaaacaaagctgatgagttagagaaaacagcctgtgcatctcctcagcttgctt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tttcataaaacaaagctgatgagttagagaaaacagcctgtgcatctcctcagcttgctt 685

                                                                       
Query: 486 ttttcagacccccaacaggaggaagtaattctgctctctaagggttggaaagtggaatac 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttttcagacccccaacaggaggaagtaattctgctctctaagggttggaaagtggaatac 745

                                                           
Query: 546 tttcaattagaatgaagccttaggtctgttctctctctctctctctct 593
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tttcaattagaatgaagccttaggtctgttctctctctctctctctct 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 171
Number of extensions: 43
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)