BAC Information

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BAC

Clone NameMSMg01-485P21
Chromosome10 (Build37)
Map Location 29,200,075 - 29,356,772
singlet/doubletdoublet
Overlap geneRspo3, EG630389
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485P21.T7 (MSMg01no485_p21.b1)MSMg01-485P21.TJ (MSMg01no485_p21.g1)
ACCAG565304AG565305
length732762
length of high quality
(start - end)		640 (81 - 720)600 (79 - 678)
definitionCHROMAT_FILE: MSMg01no485_p21.b1 PHD_FILE: MSMg01no485_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:09 2005CHROMAT_FILE: MSMg01no485_p21.g1 PHD_FILE: MSMg01no485_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,200,075 - 29,200,706)(29,356,173 - 29,356,772)
sequence
NTTAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATC
CGCGGAATTCATACTGATGTTACCGAAGCAGATTTTAGTGTTACTGGCTT
GCTTTCAAGAATTGGGTAACATGTTATAATTTTTTGATGATTTGTTGGTT
ACTTGTTATTCTTTTAAATTCCCAAGGAATGAGCAACATACCCAGTGGGA
ACACTGATGTCAGCAACAGGCACAGCAGTCACTTTCATGAGACTTCAGTC
TTGACACTTCCCAAGAAACCCCCAGAGGCAGTCCCCTCTTGGACCAGAGT
TCTTAGTCTGAAGATGTGCTACCACTAATGAAGAACCAACTTCGAGAGAG
TTCTTGGCTTAGACGGTTAAGGTCTCTCACTCAATATGCTTGGTAGAAAA
AATAGGCAGAGATTTTTAGAATAAAACCTTGTTGCCACAGAGATTCTCTA
GGATCACAGAGAGACAACATGCAGCATTTGAGCCTGGCATCTGAACAATT
TTCTCGATATCTGGAGCATGGACTACCAGAGAGAAATGTAAAACCAATTT
AGCCTCTTGTTAATATTATATAAATACAGAAGTGTGCTATTTCTTCTCAA
AACATCGTTTGAGCTTTAACTTTATTCACTATTATCCTAAATTCACCCTA
AGCTTTTTTCTCGTGACACCTAGACAAGGAGGCATGTTTTCTTCCTAGAT
GCTAAAAAAAAAAAAACACTGAGCTCTTTTAC

NNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCATTCCAAGTGGACACACA
TTTAATCATGACTGGAGGCTTCTATGGCAGCTACTTAGTAAAGTAACGAG
ATGGATTGGTTCCAAAAATATTTGAACTTATTCTGGGGACAAAAGTACCA
AAGTACAGGAATAAATCAGTGACACCTCTCCATTTCTTCATCATTGCTGA
GCTCACCTATACTTAGTACCAGTCACAGTTAATGTGTTTAAGATAAAGCA
TTCACCAAGGTTCTGCTTTCCTCAGCACCTTGCTATGGACAAATAAAGAG
TGAATTATGGTGACACTGGTGCCTGCACAGAGACACACAAGGCATCCAGC
AAAGACAAAGTATTTGATTCCATTGCATTTCCTCTGAGAAACAGAGAGGG
AAATATTTCAAAGGCTTCAGAGTCCAACTCAAAAGGAAAAATATTTATCA
TCATTCAATGCTTCCATCAGAGACTATAATGGATCTCCCAAGATGGTTTC
TTATTATAGAAAGGATCCCTAGTCTTTGTGAAACCTGAGAAGAAATGCTA
AGAAGAGAAAAACCTGAGAAGAAGCCAGAGAAAGAAGTAGAGGAACGGAA
TTGGAAATAATCACTTAAACTGGCAACAGATTAGTACTGTGGCTCAGTGC
TACTTTGCATGGAGACCGGAATTGGGGATTTTGTTATGTGACTCTCCCTT
CCTTCTATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_p21.b1 MSMg01no485_p21.b1 CHROMAT_FILE:
MSMg01no485_p21.b1 PHD_FILE: MSMg01no485_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:09 2005
         (640 letters)



>mm_chr10_29199875_29200914
          Length = 1040

 Score = 1137 bits (588), Expect = 0.0
 Identities = 621/632 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattttagtgttactggcttgctttcaagaattgggtaacatgttataattttttgatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattttagtgttactggcttgctttcaagaattgggtaacatgttataattttttgatga 260

                                                                       
Query: 61  tttgttggttacttgttattcttttaaattcccaaggaatgagcaacatacccagtggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgttggttacttgttattcttttaaattcccaaggaatgagcaacatacccagtggga 320

                                                                       
Query: 121 acactgatgtcagcaacaggcacagcagtcactttcatgagacttcagtcttgacacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgatgtcagcaacaggcacagcagtcactttcatgagacttcagtcttgacacttc 380

                                                                       
Query: 181 ccaagaaacccccagaggcagtcccctcttggaccagagttcttagtctgaagatgtgct 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ccaagaaacccccagaggcagtcccctcttggaccagatttcttagtctgaagatgtgct 440

                                                                       
Query: 241 accactaatgaagaaccaacttcgagagagttcttggcttagacggttaaggtctctcac 300
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 accactaaggaagaaccaactttgagagagttcttggcttagacggttaaggtctctcac 500

                                                                       
Query: 301 tcaatatgcttggtagaaaaaataggcagagatttttagaataaaaccttgttgccacag 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 tcaatatgcttggtagaaaaaataggcagagagttttagaataaaaccttgttgccacag 560

                                                                       
Query: 361 agattctctaggatcacagagagacaacatgcagcatttgagcctggcatctgaacaatt 420
           ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 561 agactctctaggaccacagagagacaacttgcagcatttgagcctggcatctgaacattt 620

                                                                       
Query: 421 ttctcgatatctggagcatggactaccagagagaaatgtaaaaccaatttagcctcttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ttctcgatatctggagcatggactaccagagagaaatgtaaaaccaatttagcctctagt 680

                                                                       
Query: 481 taatattatataaatacagaagtgtgctatttcttctcaaaacatcgtttgagctttaac 540
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 taatattatataaatacagaagtgtgctatttcttctcaaaacatcttttgagctttaac 740

                                                                       
Query: 541 tttattcactattatcctaaattcaccctaagcttttttctcgtgacacctagacaagga 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 tttattcactattatcctaaattcaccctaagcttttttctcatgacacctagacaagga 800

                                           
Query: 601 ggcatgttttcttcctagatgctaaaaaaaaa 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 ggcatgttttcttcctagatgctaaaaaaaaa 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no485_p21.g1 MSMg01no485_p21.g1 CHROMAT_FILE:
MSMg01no485_p21.g1 PHD_FILE: MSMg01no485_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:09 2005
         (600 letters)



>mm_chr10_29355973_29356972
          Length = 1000

 Score = 1152 bits (596), Expect = 0.0
 Identities = 599/600 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcattccaagtggacacacatttaatcatgactggaggcttctatggcagctacttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agtcattccaagtggacacacatttaatcatgactggaggcttctatggcagctacttag 741

                                                                       
Query: 61  taaagtaacgagatggattggttccaaaaatatttgaacttattctggggacaaaagtac 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaagtaatgagatggattggttccaaaaatatttgaacttattctggggacaaaagtac 681

                                                                       
Query: 121 caaagtacaggaataaatcagtgacacctctccatttcttcatcattgctgagctcacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caaagtacaggaataaatcagtgacacctctccatttcttcatcattgctgagctcacct 621

                                                                       
Query: 181 atacttagtaccagtcacagttaatgtgtttaagataaagcattcaccaaggttctgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atacttagtaccagtcacagttaatgtgtttaagataaagcattcaccaaggttctgctt 561

                                                                       
Query: 241 tcctcagcaccttgctatggacaaataaagagtgaattatggtgacactggtgcctgcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcctcagcaccttgctatggacaaataaagagtgaattatggtgacactggtgcctgcac 501

                                                                       
Query: 301 agagacacacaaggcatccagcaaagacaaagtatttgattccattgcatttcctctgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agagacacacaaggcatccagcaaagacaaagtatttgattccattgcatttcctctgag 441

                                                                       
Query: 361 aaacagagagggaaatatttcaaaggcttcagagtccaactcaaaaggaaaaatatttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaacagagagggaaatatttcaaaggcttcagagtccaactcaaaaggaaaaatatttat 381

                                                                       
Query: 421 catcattcaatgcttccatcagagactataatggatctcccaagatggtttcttattata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catcattcaatgcttccatcagagactataatggatctcccaagatggtttcttattata 321

                                                                       
Query: 481 gaaaggatccctagtctttgtgaaacctgagaagaaatgctaagaagagaaaaacctgag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaaaggatccctagtctttgtgaaacctgagaagaaatgctaagaagagaaaaacctgag 261

                                                                       
Query: 541 aagaagccagagaaagaagtagaggaacggaattggaaataatcacttaaactggcaaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagaagccagagaaagaagtagaggaacggaattggaaataatcacttaaactggcaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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