BAC Information

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BAC

Clone NameMSMg01-486G04
Chromosome10 (Build37)
Map Location 71,571,108 - 71,730,923
singlet/doubletdoublet
Overlap genenone
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486G04.T7 (MSMg01no486_g04.b1)MSMg01-486G04.TJ (MSMg01no486_g04.g1)
ACCAG565601AG565602
length738745
length of high quality
(start - end)
629 (85 - 713)602 (79 - 680)
definitionCHROMAT_FILE: MSMg01no486_g04.b1 PHD_FILE: MSMg01no486_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:41 2005CHROMAT_FILE: MSMg01no486_g04.g1 PHD_FILE: MSMg01no486_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,571,108 - 71,571,532)(71,730,322 - 71,730,923)
sequence
TGGAGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAAGA
GGGGCGGAATTCAGAACTTTTTCGCTAAGGAGAAGGAGTACCAGTGAGTA
CAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAAGTCAAGAC
AGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCT
TGAACTCTTTCTAGTGTTAGGAGCCCTTTTGTTCTTTTTCACATGTTATC
AAGTGATTAAGATAGGGCTGAAAATTCTAGATGAAATTCAGTGAAATATG
TAGAGACATTATTAGGTTAAAATGTGTTTTTAAATTGACCATTAAATTAT
ATACTGATTGGATAAACTTAGACCTTTTCAACTATCTTAACTAACAAAGG
GACCACAGTCAATTAATATTGAAACGTTGAGAGGAGATGTTAAAATTGAA
TAGGGAAGTCTGAGGAAAGCAGGTTCTCCTTCCAGTATCTTTTGAGCACA
CAATCAATATAACACTCCATAAAGATTTGAAATGTAAAGTACATACTCTG
CCTGAGATAGAAAAACCTGTTGTCTTATCCTGGGTGCCCCACCTTACCTT
GAATAAACATTAATAGACATATGTCAACACATTAAGCATACATGCAGATA
TATACAGATTGTAGAGGTATAAGGTATACGTATATACATACATTATATAT
ATGTATATATATGTGCACATATATACATATATTAAGAC
NCTTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGACTGATAGGAGATAAATAT
TATGGTTTCTACATAAATATTGATTTCTGGTATCTGTAGTTTTCTAAGTG
AGCAGACAGCAAGAATATCAAGTAAGTGACAGTCAACAAATAAACAGTTG
AGATCTGATAATGAAAGAGGAGAATGTAAAGAAGATTACCTGGAGAAGTA
AGAACAAGTTAACGAACCAGATTGTAAACTGGATATGAGATGCACCTGTA
ACCATGCTCAGTGGAGTGGGCACAGGAACTCAGTAGTGGGTATCTTGGTC
TAACCAAGAGCAATGTACCTTCTTCAAGGGTTTCATGTATAGAATGGCGG
AGCTTCTCACCATGTCAGGTACATCTCAGTGAGACAGAAACTGGGGGCAT
ACACAATTATGAATTTTGTAATATATATTAATATTAATGCTATTGAGCAA
AATAGTGAAATAGAACTGAAGTATTTCTACTTTAAATTGAGTTCTCACAA
GGATCAATACACAGTGTTCCCTTGTTTACGTTTAAAGCCATCAGACTAAA
CAACAAATCACAGTACACTGGTCATAGGTGAAATGTGAAATTTGTTTCAC
ACATGAAATAATAAAGATAAGAGTTTTCATTCAGGTGTATAACAGTGATC
TCAATTTCAGCAACATTGTGTAGCATAGCATACCATTCAGATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_g04.b1 MSMg01no486_g04.b1 CHROMAT_FILE:
MSMg01no486_g04.b1 PHD_FILE: MSMg01no486_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:41 2005
         (629 letters)



>mm_chr10_71570705_71571733
          Length = 1029

 Score =  745 bits (385), Expect = 0.0
 Identities = 415/425 (97%)
 Strand = Plus / Plus

                                                                       
Query: 204 tcagtgaaatatgtagagacattattaggttaaaatgtgtttttaaattgaccattaaat 263
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 404 tcagtgaaatatgtagagacattattaggttaagatgtggttttaaattgagcattaaat 463

                                                                       
Query: 264 tatatactgattggataaacttagaccttttcaactatcttaactaacaaagggaccaca 323
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 464 tatatactgattggataaacttagaccttttcaactatcttaactaacaaggggaccaca 523

                                                                       
Query: 324 gtcaattaatattgaaacgttgagaggagatgttaaaattgaatagggaagtctgaggaa 383
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtcaattaatgttgaaacgttgagaggagatgttaaaattgaatagggaagtctgaggaa 583

                                                                       
Query: 384 agcaggttctccttccagtatcttttgagcacacaatcaatataacactccataaagatt 443
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 584 agcaggttctccttccagtatcttctgagcacacaatcaatataacactccataaagatt 643

                                                                       
Query: 444 tgaaatgtaaagtacatactctgcctgagatagaaaaacctgttgtcttatcctgggtgc 503
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgaaatgtaaagtacatacgctgcctgagatagaaaaacctgttgtcttatcctgggtgc 703

                                                                       
Query: 504 cccaccttaccttgaataaacattaatagacatatgtcaacacattaagcatacatgcag 563
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 704 cccgccttaccttgaataaacattaatagacttatgtcaacacattaagcatacatgcag 763

                                                                       
Query: 564 atatatacagattgtagaggtataaggtatacgtatatacatacattatatatatgtata 623
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atatacacagattgtagaggtataaggtatacgtatatacatacattatatatatgtata 823

                
Query: 624 tatat 628
           |||||
Sbjct: 824 tatat 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no486_g04.g1 MSMg01no486_g04.g1 CHROMAT_FILE:
MSMg01no486_g04.g1 PHD_FILE: MSMg01no486_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:41 2005
         (602 letters)



>mm_chr10_71730122_71731123
          Length = 1002

 Score = 1110 bits (574), Expect = 0.0
 Identities = 595/602 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagactgataggagataaatattatggtttctacataaatattgatttctggtatctgta 60
           ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 802 aagactgataggagataaatactatggttactacataaatattgatttctggtatctgta 743

                                                                       
Query: 61  gttttctaagtgagcagacagcaagaatatcaagtaagtgacagtcaacaaataaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gttttctaagtgagcagacagcaagaatatcaagtaagtgacagtcaacaaataaacagt 683

                                                                       
Query: 121 tgagatctgataatgaaagaggagaatgtaaagaagattacctggagaagtaagaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgagatctgataatgaaagaggagaatgtaaagaagattacctggagaagtaagaacaag 623

                                                                       
Query: 181 ttaacgaaccagattgtaaactggatatgagatgcacctgtaaccatgctcagtggagtg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 622 ttaacgaaccagattgtaaactggaaatgagatgcacctgtaaccatgctcagtggagtg 563

                                                                       
Query: 241 ggcacaggaactcagtagtgggtatcttggtctaaccaagagcaatgtaccttcttcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggcacaggaactcagtagtgggtatcttggtctaaccaagagcaatgtaccttcttcaag 503

                                                                       
Query: 301 ggtttcatgtatagaatggcggagcttctcaccatgtcaggtacatctcagtgagacaga 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggtttcatgtatagaatggtggagcttctcaccatgtcaggtacatctcagtgagacaga 443

                                                                       
Query: 361 aactgggggcatacacaattatgaattttgtaatatatattaatattaatgctattgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aactgggggcatacacaattatgaattttgtaatatatattaatattaatgctattgagc 383

                                                                       
Query: 421 aaaatagtgaaatagaactgaagtatttctactttaaattgagttctcacaaggatcaat 480
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 382 aaaatagtgaaatagaacggaagtatttctactttaaatagagttctcacaaggatcaat 323

                                                                       
Query: 481 acacagtgttcccttgtttacgtttaaagccatcagactaaacaacaaatcacagtacac 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 322 acacagtgttcccttgtttaggtttaaagccatcagactaaacaacaaatcacagtacac 263

                                                                       
Query: 541 tggtcataggtgaaatgtgaaatttgtttcacacatgaaataataaagataagagttttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggtcataggtgaaatgtgaaatttgtttcacacatgaaataataaagataagagttttc 203

             
Query: 601 at 602
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)