BAC Information

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BAC

Clone NameMSMg01-486K08
Chromosome10 (Build37)
Map Location 81,066,204 - 81,066,841
singlet/doubletsinglet
Overlap genenone
Upstream geneScamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6
Downstream geneBC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486K08.T7 (MSMg01no486_k08.b1)MSMg01-486K08.TJ (MSMg01no486_k08.g1)
ACCAG565800AG565801
length738740
length of high quality
(start - end)
545 (50 - 594)644 (80 - 723)
definitionCHROMAT_FILE: MSMg01no486_k08.b1 PHD_FILE: MSMg01no486_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:00 2005CHROMAT_FILE: MSMg01no486_k08.g1 PHD_FILE: MSMg01no486_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAAACATTGTACCATAACAGAGACTATCTGCAGCTGGCAAA
ACCACGCCTCTGCTAGAGCACGAGGCAAATCATTGTCAGCTGCTGGGGAC
AGTCCGAAGCAGCCCCACCCCCCACAGACAAAGACACATTCTTAAAATAT
TTCTGTATTTTTAAAAGAAGCCTAATGGGGGCTGGCGAGATGGCTCAGTG
GGTAAAAGCACTGACTTGCTCTTCCGAAAGTCATGAGTTCAAATCCCAGC
AACCACATGGTGGCTCACAACCATGAGATCTGATGCCCTCTGCTGGTCTG
AAGTAATCTACATTGTACTTATATGTAATAATAAAATCTTAAAAAAAAAA
AAAAAGAAGCCTAATGGGCCTGGTGAGATGGCTCAGTGGGTAAGAGCACC
CGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTG
GCTCACAACCATCAGTAATGAGATCTGACGCCCTCTTCTGGTATGTCTGA
AGACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAA
AAAAAGAAGCCTAAGGGTTGGAAGAGATGGCTCANCAGTTAAGAGCACTG
ACTGCTCCTTCCAAGGGTCCTGATTTCAAACCCCAGCAACCCACTGGTGG
GTCCACAAACATCGGTTAAGGGAATCTGACGGCCTCTN
AGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAATCTGACCCTGCCTCCT
GAGTGTCTTACTTAAATTTATTTAATTCCATAGTGTTGTTTTATTACCAC
ATTTATTTTCGTTATTTCATTCTTGTTACATATTTATTGCAGGTTCTTTC
TTTTTTTTTTTTTTGGTCTTTTTTGTTTGTTTGATTTTTGAGACAGGGTT
TCTCTGTGTAGTCCTGGCAGTCCTGAAACTGGCTGGCCTTGCACTCACAG
AGATACTCGTACCTCAGGCATGGGCCACCACACCCATCCCATTTTATTTT
ATTTTATTTTTCCATTTTTATTAGGTATTTAGCTCATTTACCCATTTTAT
TTTTAAATTTATTCTTTCTTTTTTCTTCCTCCAGCCACTCACGATTCTAA
ATTTATCCTTATATAAGAATGTGGGCTGGAGAGATGGCTCAGTGGGTAAG
AGTATTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACTACA
TGGTGGCTCACAACCATCCGTGATGAGGTTTGATACCCTCTTCTGGTGTG
TCTGAAGACAGCTATAGTGTACTCACATATAATAAATAGATAAATCTTAA
AAAAAAATAAGAACATACATGGACCTTGTGATCCTCTTGAGTCAGCTTCT
AGGGATCACTGTAGCTGGGTTCCTAGAAAGCAGAAAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_k08.g1 MSMg01no486_k08.g1 CHROMAT_FILE:
MSMg01no486_k08.g1 PHD_FILE: MSMg01no486_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:00 2005
         (644 letters)



>mm_chr10_81066004_81067047
          Length = 1044

 Score = 1156 bits (598), Expect = 0.0
 Identities = 630/648 (97%), Gaps = 14/648 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaatctgaccctgcctcctgagtgtcttacttaaatttatttaattccatagtgttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatctgaccctgcctcctgagtgtcttacttaaatttatttaattccatagtgttgt 260

                                                                       
Query: 61  tttattaccacatttattttcgttatttcattcttgttacatatttattgcaggttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttattaccacatttattttcgttatttcattcttgttacatatttattgcaggttcttt 320

                                                                       
Query: 121 cttttttttttttttg---gtcttttttgtttgtttgatttttgagacagggtttctctg 177
            ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttttttttttttttttgtcttttttgtttgtttgatttttgagacagggtttctctg 380

                                                                       
Query: 178 tgtagtcctggcagtcctgaaactggctggccttgcactcacagagatactcgtacctca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtagtcctggcagtcctgaaactggctggccttgcactcacagagatactcgtacctca 440

                                                                       
Query: 238 ggcatgggccaccacacccatcccattttattttattttatttttccattttt-attagg 296
           ||||||||||||||||||||||||||||||||||          ||||||||| ||||||
Sbjct: 441 ggcatgggccaccacacccatcccattttatttt----------tccattttttattagg 490

                                                                       
Query: 297 tatttagctcatttacccattttatttttaaatttattctttcttttttcttcctccagc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tatttagctcatttacccattttatttttaaatttattctttcttttttcttcctccagc 550

                                                                       
Query: 357 cactcacgattctaaatttatccttatataagaatgtgggctggagagatggctcagtgg 416
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 551 cactcacgattctaaatttatccttatttaagaatgtgggctggagagatggctcagcgg 610

                                                                       
Query: 417 gtaagagtattgactgctcttctgaaggtcctgagttcaaatcccagcaactacatggtg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtaagagtattgactgctcttctgaaggtcctgagttcaaatcccagcaactacatggtg 670

                                                                       
Query: 477 gctcacaaccatccgtgatgaggtttgataccctcttctggtgtgtctgaagacagctat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctcacaaccatccgtgatgaggtttgataccctcttctggtgtgtctgaagacagctat 730

                                                                       
Query: 537 agtgtactcacatataataaatagataaatcttaaaaaaaaataagaacatacatggacc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agtgtactcacatataataaatagataaatcttaaaaaaaaataagaacatacatggacc 790

                                                           
Query: 597 ttgtgatcctcttgagtcagcttctagggatcactgtagctgggttcc 644
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 ttgtgatcctcttgagtcagcttctagggatcactgtagctgggttcc 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)