BAC Information

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BAC

Clone NameMSMg01-486M17
Chromosome10 (Build37)
Map Location 29,978,454 - 30,122,056
singlet/doubletdoublet
Overlap geneLOC212815
Upstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
Downstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486M17.T7 (MSMg01no486_m17.b1)MSMg01-486M17.TJ (MSMg01no486_m17.g1)
ACCAG565914AG565915
length738758
length of high quality
(start - end)		612 (76 - 687)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no486_m17.b1 PHD_FILE: MSMg01no486_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:11 2005CHROMAT_FILE: MSMg01no486_m17.g1 PHD_FILE: MSMg01no486_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,978,454 - 29,979,065)(30,121,811 - 30,122,056)
sequence
NNNAAACTATAATTGCGGCCGCTAAACGACTACTATATTCAGAAGAGCGC
GGAATTCAATGCATTTCCTCTTTTAGCTGAGTTCTTTGTCCTATAGCATT
TGAACCAACTGCCTTCTAAATCACTGGATTTCCACTCAGCTCTCTACCCA
TATCTCCATGTTTTCTGTTGACCACACCTCCAGCATTTGCTAAAACAATT
TGAAATCAACAGATTCTAACCTCTGCTTTAGAAACTAACTTCACTGATAC
CCCAGATCTTTGTACCTCATATCCTAGATCTCTAACCCAACAGCCAGATG
AATGTATCTCCTTTCACTTTTCTAAAAATTCTCAAACTTAGATAATAGTC
AAGGAGGATTTATCACCTCCATCACAGCCTCCTCACCCTGAATTTCTTCC
TGTGTGAATGATGCTGTGTACACACAGTTGTGTAGTAGAACAACCTCCTT
GCCATCTCCATTGTTACACAGGTTCTATCTTGGCTTCTTATTGTATCTCT
CTTATAAATACACCCCAGTGTGTTCCATCCTCTTATCCCAGTGGACACTA
CATTCAATTGTTATAATCCTCTGCATTCCATCTATATTAAATCACTACAT
ATGTACTGCATATTTATTTTTGGCTACTACCCTGGTCTTTCTCCTATTGA
ATTTATCCATTCCTTCTAAATTCCCATATCTCAGAAAGTAGGTCCAATCA
TTTTTCTATAATTTAAAACCTTATAATATTTAAACATT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGCTGTTTGCAAGACTCTTTATATTTT
AATTGAATGGAAAGAATATATATTTTATAGACAATGTTAAATTTCCAAGA
AAAAAATTGTATTCTCCAAACAAGTAAACATAAACTACTGTTTTAATGGT
TTTTCACTCATTAAAGAAACCATAAAATAAACATATCCAGGCTCTAAAAA
CGAAATATAGATATGACTACAGGCTCCCACATCACAATAAATTATTCTTG
ATTCCTGTTCCCTATTTAGCATTTATCAACAGTATTTAAGTTTGATACTG
AATATGTGTGTATGTGTGTGTGTGTGTGTTTGTAACAATCGTAAATATTT
CTACCAAATGAGAGTATGGCTATACAATCAATTCTAGCTATTTCCTCCCA
GTTCCAGTTATGACCATTTCTAAATTCTCTAGAAAGGCAGCCTTAGAATA
ACCACCTCCAGCCCCAAAGCCCAGGGAACTGGGATGACAACTCTTCATAA
CTTCTTCAAGCTGAATGTGGGCATTGAGAAATGTTTGAAGGGTGAGAGAA
GGGTAGGGAAAATAGGGGGAATTGGTGGNNNNTNNNNNTNCCNNNNCNTT
TGTTTTTTTTTTTTTTGGCCCTGTGCCTGCCTGGTTCTGTTTTTTGTTCC
CTCTTCCTTGCGCTTTTGTTGTCCCTCTTTCTCGTTCTTTCTGTCTTTTT
TCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_m17.b1 MSMg01no486_m17.b1 CHROMAT_FILE:
MSMg01no486_m17.b1 PHD_FILE: MSMg01no486_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:11 2005
         (612 letters)



>mm_chr10_29978254_29979265
          Length = 1012

 Score = 1168 bits (604), Expect = 0.0
 Identities = 610/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgagttctttgtcctatagcatttgaaccaactgccttctaaatcactggatttccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgagttctttgtcctatagcatttgaaccaactgccttctaaatcactggatttccac 260

                                                                       
Query: 61  tcagctctctacccatatctccatgttttctgttgaccacacctccagcatttgctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tcagctctctacccatatctccatgttttctgttgaccacacctccagcatctgctaaaa 320

                                                                       
Query: 121 caatttgaaatcaacagattctaacctctgctttagaaactaacttcactgataccccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatttgaaatcaacagattctaacctctgctttagaaactaacttcactgataccccag 380

                                                                       
Query: 181 atctttgtacctcatatcctagatctctaacccaacagccagatgaatgtatctcctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttgtacctcatatcctagatctctaacccaacagccagatgaatgtatctcctttc 440

                                                                       
Query: 241 acttttctaaaaattctcaaacttagataatagtcaaggaggatttatcacctccatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttctaaaaattctcaaacttagataatagtcaaggaggatttatcacctccatcac 500

                                                                       
Query: 301 agcctcctcaccctgaatttcttcctgtgtgaatgatgctgtgtacacacagttgtgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctcctcaccctgaatttcttcctgtgtgaatgatgctgtgtacacacagttgtgtag 560

                                                                       
Query: 361 tagaacaacctccttgccatctccattgttacacaggttctatcttggcttcttattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaacaacctccttgccatctccattgttacacaggttctatcttggcttcttattgta 620

                                                                       
Query: 421 tctctcttataaatacaccccagtgtgttccatcctcttatcccagtggacactacattc 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctctcttataaatacaccccggtgtgttccatcctcttatcccagtggacactacattc 680

                                                                       
Query: 481 aattgttataatcctctgcattccatctatattaaatcactacatatgtactgcatattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattgttataatcctctgcattccatctatattaaatcactacatatgtactgcatattt 740

                                                                       
Query: 541 atttttggctactaccctggtctttctcctattgaatttatccattccttctaaattccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttttggctactaccctggtctttctcctattgaatttatccattccttctaaattccc 800

                       
Query: 601 atatctcagaaa 612
           ||||||||||||
Sbjct: 801 atatctcagaaa 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_m17.g1 MSMg01no486_m17.g1 CHROMAT_FILE:
MSMg01no486_m17.g1 PHD_FILE: MSMg01no486_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:11 2005
         (246 letters)



>mm_chr10_30121611_30122256
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctgtttgcaagactctttatattttaattgaatggaaagaatatatattttatagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggctgtttgcaagactctttatattttaattgaatggaaagaatatatattttatagac 387

                                                                       
Query: 61  aatgttaaatttccaagaaaaaaattgtattctccaaacaagtaaacataaactactgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 386 aatgttaaatttccaagaaaaaaattgtattctccaaacaagtaaacataaactactgtc 327

                                                                       
Query: 121 ttaatggtttttcactcattaaagaaaccataaaataaacatatccaggctctaaaaacg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 326 ttaatggtttttcactcattaaagaaaccataaaataaacatacccaggctctaaaaacg 267

                                                                       
Query: 181 aaatatagatatgactacaggctcccacatcacaataaattattcttgattcctgttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaatatagatatgactacaggctcccacatcacaataaattattcttgattcctgttccc 207

                 
Query: 241 tattta 246
           ||||||
Sbjct: 206 tattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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