BAC Information

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BAC

Clone NameMSMg01-487C08
Chromosome10 (Build37)
Map Location 50,845,558 - 50,845,835
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1
Downstream geneLOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487C08.T7 (MSMg01no487_c08.b1)MSMg01-487C08.TJ (MSMg01no487_c08.g1)
ACCAG566179AG566180
length750734
length of high quality
(start - end)		677 (74 - 750)556 (81 - 636)
definitionCHROMAT_FILE: MSMg01no487_c08.b1 PHD_FILE: MSMg01no487_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:40 2005CHROMAT_FILE: MSMg01no487_c08.g1 PHD_FILE: MSMg01no487_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAAAATATTCTAAAATTCTTAGCTTTGAATGAAAATGAA
AATACAACATATCAAAATCTGTGGGATGTAATGAAGACATTCTGAAACTG
CAAAGTTTATAGCACTAAGTGCCTTATGAAAAAAATTCTGGCAAGATCTC
ATATTAATAATTTAACAGTGCATCTGAAAGCCTTGGAAAAACAAGAACAA
ACTACTTTCCAAAAGAGGAGAAGGAAGGAAAGAGGGAGGTAAGGAAGAAA
GGAAAGAAAGAGAGTGAAATTAATAAAATACTTACAACAAAATCAACAAT
ACAAAAAAATAAAAAAAATCAAGAGTTGAAAAGATTAACAAGATTGACAC
ATTTTAATCAAATTAACTAAAAGGAACAGAAAGATTATACAAATGAATAA
AGTCAGAAATGAAAAGAAATACAACAGATGCTAAGAAAATCCAGAGAATC
ATGAGAATTAATAAATTACTTTTTATTTAATTTTATTTTATAAATTAATA
AATACTTTAAAATTTCATATTCCATAAAGCTCTAAAACTTTGATTTCTAG
ATATATGATCTGCATAAATTAAATCAAAATGGAATAAATAAACCAAATAG
ACTCATAATAAATCATAAAATAGAAGCATCAATTTAAAATCTCCAATTAC
AAAAAGCACAGGGCAGATAGAAAGTAATAGAATATTTCTACATTATTTTT


NNCCTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTCATGTCAGAAACTCT
GAATGGTAAGACTCATGTGCATTTACTGAGACTTTTTAAAAATTGATTGC
AACCAGGTCTTGCTTTTATAAATTTTCAACACTCCTAGCTATATGAAAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGAGCATTTTATGGTTG
TTTTTATTTAATGCAGCTAGTACATTTTATTAGAATTGCTAGTTTACAGA
AGCAGTTTCTTTTTTGAGATAGCACTTTTATTCACTGTATCTCTTTTAAA
GCAGCTATCACATAACATGGAGCTTTTAAAATTATTTCCAAAAACAATTT
CACACTGTGCCTAGTTGATAATGATATATATCTAAGAACTTAGTGAAACT
CTTAGCAAACCTATAACTATTCAAAGACTAATAATACATCTGGGTCCTTT
CAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGCATTTGGAAGCTGAT
TATGGGATGGGTCCCTGCATATGGCAATCACTAGATGGTCCATCCTTTCG
TCACAGCTCCAAATTTTGTCTCTGTAACTCCTTCCCTGGGTGTTTTGTTC
CCATTTCTAAGATAGGGTAAAGTGGCCACACTTTGGTCTTCCTTCTTCTT
GAGGTTCATGCGCTTGGCAACGTGTATCTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_c08.g1 MSMg01no487_c08.g1 CHROMAT_FILE:
MSMg01no487_c08.g1 PHD_FILE: MSMg01no487_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:40 2005
         (556 letters)



>mm_chr10_50845369_50846324
          Length = 956

 Score =  422 bits (218), Expect = e-122
 Identities = 258/278 (92%), Gaps = 11/278 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttcatgtcagaaactctgaatggtaagactcatgtgcatttactgagactttttaaa 60
           ||||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||
Sbjct: 190 ttcttcatgtcagaaactccgaatgataacactcatgtgcatttactgagaatttttaaa 249

                                                                       
Query: 61  aattgattgcaaccaggtcttgcttttataaattttcaacactcctagctatatgaaaga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aattgattgcaatcaggtcttgcttttataaattttcaacactcctagctatatgaaaga 309

                                                                       
Query: 121 tagatagat-----------agatagatagatagatagatagatagagcattttatggtt 169
           |||||||||           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tagatagatgatagatagatagatagatagatagatagatagatagagcattttatggtt 369

                                                                       
Query: 170 gtttttatttaatgcagctagtacattttattagaattgctagtttacagaagcagtttc 229
           ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 370 gttttgatttaatgcagctagtgcattttattagaattgctagtttacagaagcagtttc 429

                                                 
Query: 230 ttttttgagatagcacttttattcactgtatctctttt 267
           ||||||||||||||||||| || |||||||||||||||
Sbjct: 430 ttttttgagatagcactttcatccactgtatctctttt 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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