BAC Information

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BAC

Clone NameMSMg01-487L08
Chromosome10 (Build37)
Map Location 11,713,929 - 11,714,213
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm1, Shprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172, Stx11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487L08.T7 (MSMg01no487_l08.b1)MSMg01-487L08.TJ (MSMg01no487_l08.g1)
ACCAG566606AG566607
length748746
length of high quality
(start - end)		317 (429 - 745)666 (81 - 746)
definitionCHROMAT_FILE: MSMg01no487_l08.b1 PHD_FILE: MSMg01no487_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:24 2005CHROMAT_FILE: MSMg01no487_l08.g1 PHD_FILE: MSMg01no487_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXATAGTCAGAAGAGCG
CNGGAATCTGNGNATATACAGAAAAAAAATTCTTTAAGTGTAATATATTA
ATTAATTAATATATTACCACATATTTTCATTATCAACTGTCTTTTAAAGA
GCCAAACTTGCATTTAGATGAATTCAGTTTATTAAGGTTTTATTTTATAT
TTAATCAGGTTTTGTTTTTTACCCTATTGAAAAAAACTTTGTCCTTAAAG
TTGTGGGCTTGTTTTGTTTGTTTTAGGGGTAGGGTCTTCAACTCCTGGGC
AGAGGCCACTTACCTAGTTCAGCCTGCTAATGTAGCTAGATCACAGCATG
TGATGTTCTTGCCAGGTTCCGGATGTTTTCCTGTTGAAAAGGATTAGCTA
TTTCCTGAAGGTACATGGTCAACTGCCGTGAGATAAAGGATAGCTCTCCA
TTTCCCTTGAGCTCTTTACCTACTTAGCTATCTATCTATCATCTATCTAT
CTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTCTCCAATTGTTTCTGCATTTGT
GGTGAAGGTGGACTTTCCTCCTCTGAATAACCTTGAAATCAGTTAGCTCT
TTTAGTGAAAATAAGTTGGGTCCATAAGTGTTGTGTTTTATAAAACCAAG
GATATGTTTTGTAGAGCACAGTATGGTGCAGTGGGAGAAGTGCCTAGG

NNTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTACACTGGGGCATCAAG
CCTTCACAGGACCAAGGGTCTCTCCTTCCACTGATGCCTGATAAGCCATC
CTCTACTACATACATAGCTGGAGCCATGGTCCCCTCCATGTGTACTCTTT
GGTTGGTGGTTTAGTCCCTGGTAGCTCTGGGAGTTCTGGTTGGTTGATAT
TGTTGTTCTTCCTATGGGGTTACCCTTCAGCTCCTTCAGTCCTTCCCCTA
ACTCCTCCATTGGTGTCCCAGTGCTTATTCCAATGGTTGACTGCAAGCAT
CTGCATCAGTATTGTTCAGGCTCTGGCAGAGCCTCTCAGGGGACAGATAT
ATCAGGCTCCTATCAGCAGGCACTTCTTGGCATCAGCAATAGTGTCTGAG
TTTGGTGTCTATGTTTGGAATGGATGCCCAGGTGGGACAGTCTCATGGCC
TTTCCTTCAGTCTCTGCTCCACTCTTTGTCCCTGTATTTCCTTTAGACGG
GAGCAATTCTGGGTTAAAAATTTAGAGATGAGTGGGTAGACCCATCCCCT
AACTGGGAGCCTTGCCTAACCTTGGATATGGTCTCTATAGGTTCTCCCTC
CCCTTTGTTGGGCATTTCAACTAATCTCATCTCCATTGGATCCTAGTAAC
CTCTCGCTTTCCTGGCATCTGGGACTTTCTGGTGGCAACCCTTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_l08.b1 MSMg01no487_l08.b1 CHROMAT_FILE:
MSMg01no487_l08.b1 PHD_FILE: MSMg01no487_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:24 2005
         (317 letters)



>mm_chr10_11713697_11714413
          Length = 717

 Score =  474 bits (245), Expect = e-138
 Identities = 284/317 (89%), Gaps = 32/317 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagataaaggatagctctccatttcccttgagctctttacctacttagctatctatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tgagataaaggatagctctccatttcccttgagctctttacctacttagctatctatcta 292

                                                                       
Query: 61  tcatctatctatctgtctatctatctatctatctatctatctatctatctatctatctat 120
           ||        |||||                        ||| |||||||||||||||||
Sbjct: 293 tc--------atctg------------------------tctgtctatctatctatctat 320

                                                                       
Query: 121 ctatctatctatctatctatctatctatctctccaattgtttctgcatttgtggtgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatctatctatctatctatctatctatctctccaattgtttctgcatttgtggtgaagg 380

                                                                       
Query: 181 tggactttcctcctctgaataaccttgaaatcagttagctcttttagtgaaaataagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggactttcctcctctgaataaccttgaaatcagttagctcttttagtgaaaataagttg 440

                                                                       
Query: 241 ggtccataagtgttgtgttttataaaaccaaggatatgttttgtagagcacagtatggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtccataagtgttgtgttttataaaaccaaggatatgttttgtagagcacagtatggtg 500

                            
Query: 301 cagtgggagaagtgcct 317
           |||||||||||||||||
Sbjct: 501 cagtgggagaagtgcct 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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