BAC Information

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BAC

Clone NameMSMg01-488B14
Chromosome10 (Build37)
Map Location 62,314,119 - 62,314,524
singlet/doubletsinglet
Overlap geneCxxc6
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
Downstream geneSlc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488B14.T7 (MSMg01no488_b14.b1)MSMg01-488B14.TJ (MSMg01no488_b14.g1)
ACCAG566903AG566904
length715760
length of high quality
(start - end)
406 (310 - 715)275 (329 - 603)
definitionCHROMAT_FILE: MSMg01no488_b14.b1 PHD_FILE: MSMg01no488_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:54 2005CHROMAT_FILE: MSMg01no488_b14.g1 PHD_FILE: MSMg01no488_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATTCGAAGAGGATCCGCGGAATTCTCTGTTTTCCT
CAATGTCAGCTGCCTCACTCACAACCACTCCAGCTCCTGGGGATCCAATG
CCTTCCCCTGAAGTCTTGACGGGATTACAGGTATTCTCCACCACACCTCA
CAGTTCGACAAGGGTTTTACATTTCATTTTATGCCATTTACCTCTTGGGT
TTTGAGATGGTTTCTCAACATAAAGACCCTGCTAGTCTCAATCAAACTTG
GAGCTTCCTGCCTCTGCCTTCAGAGTGCTGAGGTTAAGGGCGTGTGCAGA
CTTTTCTCAGCTATTGCCTGAGCTCTTTTTTAAAAAGTGTGTGTGGGTGT
TTTGCAAGTGTGTGCCACATGTGCGCTTGGTGCCTTTGGAGGGATAAAGA
GGATGGCATTGCCTGGGGCCGGGGTTACAGATGGTTGTGAGCCACCACGT
GGATCCTCTTCCAAATCAAGCGCTTTCCAACCACTGAGCCACCTCCCCAG
CTCCTGATGTCATATTTTAGAGACAGTTTCCTGATCCAAAGTCATTCTTC
TTGTCTTCCTCACTGAAGTGGGACACCAACAGTTTCTGCAGTTTCCTCTT
GTCTTTACTACAAGGATTTCTTCCTGAGCAGTGTCCCATTGTTAAATACA
CTTCCTTGTGTTTATCCAGCCTTCTTTTTGATTGACACCTGAATTGTTTC
TTTCCCGACTATGGA
CCCGATGCAGTGTGAGGGCTGGNGGCCGCCTGTTTCACAACATTGAGGTG
AACTATAGAATTTCCAAAAAAATTCAGAATGAGCACATATTTGATTAACA
AACTTGGAGCCTATTTATGCACAACCAGCAATTAAAATGCTGGCTGGTCA
GACGGCTCATAAGGTAATGGTGCTGACTAACAGGTCATGTATGCAGGCCT
GACAACCTGAGTTGGATGCTCAGTCTTACAAAGTGTCAGGAGATCACATC
TTCCAAGAGTTGTCCTCTGATCTCTGCATGTGAGCTGCTGCAACACGTAC
ATGCCTGAACACACACTTCACTCATTCTCACACACACACACACACACACA
CACACACTTCTATCTTACTTAGAAAGAGTTGAGTAGAGTGACTCATATCT
GTAATGCCAGCTCTGGAGAGGTGGACACAGGAGAGTTGTCAACATTTCAA
GGCCACCTTGAGAACTGGGCCAGCCTGAGCTGCAGTGAGCTATCTTAAGC
AAAACCAAACAAGCCAAGGAATAATATGTGTAATTAACTACAAACTATAT
ATAAGTTGGTCCCCATAAAGACACATGCTAGGCTAGTGGCTAAGGACAGA
AACAGAAGCCTGAGTATCACTGGATAGAAAGCAACTTAAAAAATTTGAAG
ACATATTTGGAAAGCAGTGCCTAGTGGAAGCCTTGGGTTCCACCCTCAAC
ACTAAAAACAAAAAACAAAGCAGGACAAAAACCTAAAACAACAAAGACCT
ACCTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_b14.b1 MSMg01no488_b14.b1 CHROMAT_FILE:
MSMg01no488_b14.b1 PHD_FILE: MSMg01no488_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:54 2005
         (406 letters)



>mm_chr10_62313823_62314628
          Length = 806

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctattgcctgagctcttttttaaaaagtgtgtgtgggtgttttgcaagtgtgtgccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gctattgcctgagctcttttttaaaaagtgtgtgtgggtgttttgcaagtgtgtgccaca 643

                                                                       
Query: 61  tgtgcgcttggtgcctttggagggataaagaggatggcattgcctggggccggggttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgtgcgcttggtgcctttggagggataaagaggatggcattgcctggggccggggttaca 583

                                                                       
Query: 121 gatggttgtgagccaccacgtggatcctcttccaaatcaagcgctttccaaccactgagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gatggttgtgagccaccacgtggatcctcttccaaatcaagcgctttccaaccactgagc 523

                                                                       
Query: 181 cacctccccagctcctgatgtcatattttagagacagtttcctgatccaaagtcattctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cacctccccagctcctgatgtcatattttagagacagtttcctgatccaaagtcattctt 463

                                                                       
Query: 241 cttgtcttcctcactgaagtgggacaccaacagtttctgcagtttcctcttgtctttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttgtcttcctcactgaagtgggacaccaacagtttctgcagtttcctcttgtctttact 403

                                                                       
Query: 301 acaaggatttcttcctgagcagtgtcccattgttaaatacacttccttgtgtttatccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acaaggatttcttcctgagcagtgtcccattgttaaatacacttccttgtgtttatccag 343

                                                         
Query: 361 ccttctttttgattgacacctgaattgtttctttcccgactatgga 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccttctttttgattgacacctgaattgtttctttcccgactatgga 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)