Query= MSMg01no488_g14.b1 MSMg01no488_g14.b1 CHROMAT_FILE:
MSMg01no488_g14.b1 PHD_FILE: MSMg01no488_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:20 2005
(543 letters)
>mm_chr1_4635605_4636547
Length = 943
Score = 638 bits (330), Expect = 0.0
Identities = 420/450 (93%), Gaps = 7/450 (1%)
Strand = Plus / Minus
Query: 97 ttgagacagggtttctctgtatagttctgaccattctgacactggctc-agtggaccaga 155
|||||||||| |||||| || |||| |||||||| ||||||||||| | |||||||||||
Sbjct: 943 ttgagacaggttttctccgtgtagtcctgaccatcctgacactggc-caagtggaccaga 885
Query: 156 ttggcctcagattcagagatctgtctgtttaatccctggacttgagaggcagagagagga 215
||||||||| |||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 884 ttggcctcaaattcggatatctgcctgtttaatccctggacttgagaggcagagagagga 825
Query: 216 gagtctgtgtgagttcaaagacaa-cctgtattacacagagagatc-gagacagccagag 273
|| | ||||||||||||||||||| || | | || ||| |||| || |||||||||||||
Sbjct: 824 gaatatgtgtgagttcaaagacaatcc-g-a-tagacacagagttctgagacagccagag 768
Query: 274 ctacatagtgaaacccttctctaaccccaccctccatcctgaagaaccaagaaatacaga 333
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctacatagtgaaacccttctctacccccaccctccatcctgaagaaccaagaaatacaga 708
Query: 334 gtggactactgtgctaaggacttgcagtgagctgcattgctaagctagggtggtaagtat 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 707 gtggactactgtgctaaggacttgcagtgagctgcattgctaagctagggtggtaagtgt 648
Query: 394 accagatggagaccaaactgttttgatgtagttgtttcctacttaacattggtttatgga 453
|||||||||||||| || ||||||||| | |||||||||||||| ||||||||||||||
Sbjct: 647 gccagatggagaccatacagttttgatgaaattgtttcctacttaccattggtttatgga 588
Query: 454 atgtctccttttccttagtcagaggacaagtggagtaatgcaggtggctgtcaggactag 513
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 587 atgtctccttttccttagtcagaggacaaatggagtaatgcaggtggctgtcaggactag 528
Query: 514 atggagtgtcccttccatcagttttctacc 543
||||||||||||||||||||||||||||||
Sbjct: 527 atggagtgtcccttccatcagttttctacc 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_g14.g1 MSMg01no488_g14.g1 CHROMAT_FILE:
MSMg01no488_g14.g1 PHD_FILE: MSMg01no488_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:20 2005
(619 letters)
>mm_chr10_17644743_17645766
Length = 1024
Score = 1118 bits (578), Expect = 0.0
Identities = 612/624 (98%), Gaps = 5/624 (0%)
Strand = Plus / Plus
Query: 1 taaagtctgtacttgataggtgccaaagttccagccctcattttgcaaagccaaccagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 taaagtctgtacttgataggtgccaaagttccagccctcattttgcaaagccagccagag 260
Query: 61 aagggtgtcgcttggttggcctcaatgcaaattcagtgagcagaaatccttcctttgcag 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggtgtagcttggttggcctcaatgcaaattcagtgagcagaaatccttcctttgcag 320
Query: 121 taacacatgactagaccgccagtctagtagatttttcttttttgtattaaaacaa--gag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 taacacatgactagaccgccagtctagtagatttttcttttttgtattaaaacaaaagag 380
Query: 179 tagtatggaagacaaaaaa-taaaagcaaatgactattggaaatactgataagtttgtgt 237
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatggaagacaaaaaaataaaagcaaatgactattggaaatactgataagtttgtgt 440
Query: 238 gctaatattttattatccacactttccacttcctcttttctacttctacagtgaatggaa 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaatatgctattatccacactttccacttcctcttttctacttctacagtgaatggaa 500
Query: 298 caccattaaatgacaacctgaatcttgcccatcgtaactaatcacagctatatttaatta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caccattaaatgacaacctgaatcttgcccatcgtaactaatcacagctatatttaatta 560
Query: 358 cttacaaatattacggatgaggtcagatttctttttaattagtatatgctagtaagtata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttacaaatattacggatgaggtcagatttctttttaattagtatatgctagtaagtata 620
Query: 418 gtcaacatcaact-actgtatcagactaaaaacaagcaaaacaaaccaacaaaaaaa-gc 475
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 gtcaacatcaacttactgtatcagactaaaaacaagcaaaacaaaccaacaaaaaaaagc 680
Query: 476 ctaactacaataaagagggaaccaagcctagcggcacacagtagtaatcccagcacttag 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 ctaactacaataaagagggaaccaagcctagcggcacacagtaataatcccagcacttag 740
Query: 536 gaagctatggcaggaggatcaaggattgttgagttcaaagccaccctgtgctacacactg 595
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 741 gaagctatggcaggaggatcaaggattgttgagttcaaagccacccagtgctacacactg 800
Query: 596 agatactatccctctccccacaaa 619
||||||||||||||||||||||||
Sbjct: 801 agatactatccctctccccacaaa 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1024
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1014
Effective search space: 617526
Effective search space used: 617526
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
