BAC Information

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BAC

Clone NameMSMg01-488I11
Chromosome10 (Build37)
Map Location 84,723,604 - 84,723,949
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1
Downstream geneEG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I11.T7 (MSMg01no488_i11.b1)MSMg01-488I11.TJ (MSMg01no488_i11.g1)
ACCAG567230AG567231
length640712
length of high quality
(start - end)
347 (294 - 640)367 (324 - 690)
definitionCHROMAT_FILE: MSMg01no488_i11.b1 PHD_FILE: MSMg01no488_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:29 2005CHROMAT_FILE: MSMg01no488_i11.g1 PHD_FILE: MSMg01no488_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCACATCAGATGAGAGGCGCGGAATTCTTCTTGCGAAAAAAGGGGAGC
AGGGAGGGCCTGGCCCTGAATGTGGCTGGCGCCATCTTGTAAGCCTGGGG
TCTGCATGGAACAACAGGGTCTACCAGCACAGGCACTTCTTCCCTCAGCT
TCCAGGATGTCCCCAGGGGTGAGGGTGGCGGGAGGAATAAATACTGATTG
TCCACACTCTTCCCCCGTGATGTTCTCTTCACTGTGGTCTAGGAACAATG
GAGCAAGCTTATCATGGGCTGAAACCACAAACCAGAGTTTTTGGACAAGT
TCTCAGGCAATCCCAGATAAGATCTGCTCCAAGCCGCCCAACTTTCTTCT
AGTGGCTAGGAGATATTTGGGGGACCCAAGAAGGCAATTCTACAACTTAT
AGTGGCCAGCCTCACTTCTGTCAATGTTGATTGTGTCTATTGAGCATGGG
TGTCTATCATCCATCTCACAGTCAAGGCTCCTACAGCAGCCTCAGACACA
TGGGGCAGGAGTATCTCAACAGCACATGTACACGACATCCTGCATTCATC
TATCCTACAGGACCTCATGCCCATCTCTATGGTTCTCCTTGGTCTAGAAT
GGCCACCTCCACCTTCCTTGAACCAAAGTGCATCCTTCCA
GCACAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCACCAAGGAGTTCACTTCACATGATTGTATCCAGT
TGTACCTGTTGTGAAGCGCTTTAAAAGTCAAGGATGAGGAGAGACATGCA
TCTTGAAACAAAACAAGACGATTTCTTCTATTTGCTCCCCTGAGCCTTGT
GACTTGCTGCTGGGTGGTCTCACCAGACCCTCGGGCAGCGTCATAGCTCT
TCCAACACAGGTTTCCTCCATTGGTTTTCCTTTGTTTGAAAGGGTTAGAG
CAATTTCTTGCTAGATCTATTTTTTATAGTCTTAGATCCTGCTAACTTGG
TGTGATGGTTTGTATATGCTCGGCCCAGGGAGTGGCACTATTAGAAGGTG
CAGCCTTGTTGGAGTAGTGTGTCACTGTGGGTGTGGGCTTCAAGACCCTC
AACCTAGCTGCTTAGAAGCCAGCCTTCTGCTAACAGCCTTCTGATGAAGA
TGTAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTGGATGCTGCCATG
CTTCTGCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCC
CAATTAAATGGTGTCCTTAGAAGATTTGCCTTGGTCATGTCTGTTCACAG
CAGTAAAACCCTGACTAAGACACTTGGGAAGGTGAGGCAGCAGAATCAGA
AGTTCAAGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i11.b1 MSMg01no488_i11.b1 CHROMAT_FILE:
MSMg01no488_i11.b1 PHD_FILE: MSMg01no488_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:29 2005
         (347 letters)



>mm_chr10_84723404_84724150
          Length = 747

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacaagttctcaggcaatcccagataagatctgctccaagccgcccaactttcttctagt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 546 gacaagttctcaggcaatcccagataagatctgctccaagccacccaactttcttctagt 487

                                                                       
Query: 61  ggctaggagatatttgggggacccaagaaggcaattctacaacttatagtggccagcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggctaggagatatttgggggacccaagaaggcaattctacaacttatagtggccagcctc 427

                                                                       
Query: 121 acttctgtcaatgttgattgtgtctattgagcatgggtgtctatcatccatctcacagtc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acttctgtcattgttgattgtgtctattgagcatgggtgtctatcatccatctcacagtc 367

                                                                       
Query: 181 aaggctcctacagcagcctcagacacatggggcaggagtatctcaacagcacatgtacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaggctcctacagcagcctcagacacatggggcaggagtatctcaacagcacatgtacac 307

                                                                       
Query: 241 gacatcctgcattcatctatcctacaggacctcatgcccatctctatggttctccttggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gacatcctgcattcatctatcctacaggacctcatgcccatctctatggttctccttggt 247

                                                         
Query: 301 ctagaatggccacctccaccttccttgaaccaaagtgcatccttcc 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctagaatggccacctccaccttccttgaaccaaagtgcatccttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)