Query= MSMg01no488_l03.b1 MSMg01no488_l03.b1 CHROMAT_FILE:
MSMg01no488_l03.b1 PHD_FILE: MSMg01no488_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:41 2005
(658 letters)
>mm_chr10_43893340_43894397
Length = 1058
Score = 1100 bits (569), Expect = 0.0
Identities = 635/663 (95%), Gaps = 13/663 (1%)
Strand = Plus / Minus
Query: 5 gaattcacctttacctgctaagccatctct-ctagccccaagaaatatctatagattctc 63
|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 1036 gaattcaccttttgctgctaagccatct-tgctagccccaagaaatatctatagattctc 978
Query: 64 tcccttgccgtagccactcaatatgaatgcgttgtgtatatgttcaacacatttcttcgt 123
|||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 977 tcccttgccgaagccactcaatacgaatgctttgtgtatatgttcaacacatttcttcgt 918
Query: 124 tactttctgtcctgtgactataaaag--------ttctctccttttatagaaggacatgt 175
|||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 917 tactttctgtcctgtgactataaaagtttacaaattctctcc---catagaaggacatgt 861
Query: 176 cattcagggcttgagtctgttctatggccatggccactcatatttgactcagaataaact 235
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 860 cattcagggcttgagactgttctacggccatggccactcatatttgactcagaatcaact 801
Query: 236 attttctctttctattggaacaaagtacttctatgtagctgaggctgccactgggtttgc 295
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 800 attttctctttctattggaacaaagtacttctctgtagctgaggctgccactgggtttgc 741
Query: 296 tatcctgtttccctgagttctgagagtccaaggatgtgccaccatgcctaatttagaata 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tatccggtttccctgagttctgagagtccaaggatgtgccaccatgcctaatttagaata 681
Query: 356 aactatcttatttccttgtagtagagttggaaccttatgtggacactccccacccagcca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aactatcttatttccttgtagtagagttggaaccttatgtggacactccccacccagcca 621
Query: 416 cccctggtactggcacccggaaccaatgtggtacgtttattaccaacaatgaagccgcat 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 620 cccctggtactggcacccggaaccaatgtggtacgtttattaccaacaatgaagctgcat 561
Query: 476 ctaaggctcttgcatgacaatgaacctgataattagcacacagcgtgcatgctgtacatt 535
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 560 ctaaggctcttgcatgacaatgaacctgataattagcacacagtgtgcatgctttacatt 501
Query: 536 atgagtcagcattggtgtaaattctgtaggttctgacttgtgcgatggtatgtgtccacc 595
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 atgagtcagcattggtgtaaattctgtaggttctgacgtgtgcgatggtatgtgtccacc 441
Query: 596 agtccagttgcttaaagaatagatgatgctcaaagtgcacactggagattttggactggt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtccagttgcttaaagaatagatgatgctcaaagtgcacactggagattttggactggt 381
Query: 656 ttc 658
|||
Sbjct: 380 ttc 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_l03.g1 MSMg01no488_l03.g1 CHROMAT_FILE:
MSMg01no488_l03.g1 PHD_FILE: MSMg01no488_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:41 2005
(623 letters)
>mm_chr10_43769848_43770870
Length = 1023
Score = 1145 bits (592), Expect = 0.0
Identities = 615/628 (97%), Gaps = 9/628 (1%)
Strand = Plus / Plus
Query: 1 caagattctttattagcccagtgacacagtactcagagtctggcacccttgtctttcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 caagattctttattagcccagtgacacagtactcagagtctggcacccttgtctttcctt 251
Query: 61 gtttgcaaagcatgaataatgatacccagctcagggttcgagtatgggctaactaataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gtttgcaaagcatgaataatgatacccagctcagggttcgagtatgggctaactaataat 311
Query: 121 tgcacagtgctaatcgtaagccggcttcatggcaccagcaggtagcacagcctcgaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcacagtgctaatcgtaagccggcttcatggcaccagcaggtagcacagcctcgaggaa 371
Query: 181 tgtatgtgttaattatctagtgctacagctgtatcagtcactggaaggagggtggtctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgtatgtgttaattatctagtgctacagctgtatcagtcactggaaggagggtggtctga 431
Query: 241 atgtatctacacttacttcattggaagatatcaccctggcctttgggttcctgctctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 atgtatctacacttacttcattggaagatatcaccctggcctttgggttcctgctctgtg 491
Query: 301 ctcatcttcaacgtagcacagatagtttctttctgtttctcaagtgggtccctcgaggga 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 492 ctcatcttcaacgtagcacagatagtttatttctgtttctcaagtgggtccctcgaggga 551
Query: 361 agggcatgttggtattttagcttgaggaataccacagtgctgtgtttacctggctgcttc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 552 agggcatgttggtattttagcttggggaataccacagtgctgtgtttacctggctgcttc 611
Query: 421 tg---------gagaggagagcagcaggaaatatccccaaacaaaagaagggacttactc 471
|| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgaactcactggagaggagagcagcaggaaatatccccaaacaaaagaagggacttactc 671
Query: 472 agcctggcagcctgacactcaagcatcctgacacaggtgacagtgccagaatgtgaccct 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agcctggcagcctgacactcaagcatcctgacacaggtgacagtgccagaatgtgaccct 731
Query: 532 gagggcagagctgccctggttacaaaactgcttcctatccagaaatggctttctgctatg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gagggcagagctgccctggttacaaaactgcttcctatccagaaatggctttctgctatg 791
Query: 592 taagatatatctataaggggcgattttt 619
|||||| ||||||||||||| |||||||
Sbjct: 792 taagatgtatctataaggggagattttt 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
