BAC Information

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BAC

Clone NameMSMg01-489A08
Chromosome10 (Build37)
Map Location 91,045,228 - 91,045,656
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203, LOC216229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A08.T7 (MSMg01no489_a08.b1)MSMg01-489A08.TJ (MSMg01no489_a08.g1)
ACCAG567605AG567606
length821721
length of high quality
(start - end)
44 (78 - 121)431 (77 - 507)
definitionCHROMAT_FILE: MSMg01no489_a08.b1 PHD_FILE: MSMg01no489_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:06 2005CHROMAT_FILE: MSMg01no489_a08.g1 PHD_FILE: MSMg01no489_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAACCCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCATCACCAC
CCGCGGAATTCTTACANTCCTCGACCCCTTAAAAGCTAATGAAGAGCTTT
TTGAGTTCTTGGGTATTCTCTATGCCTTTTTGTTTTCTTTTCTTTTCTTT
TGGGGGGGGTTGGTTTGGTTNGNNNNGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TTTTNNNNNNTTTTNNTNNTTTTNNNTTTTTTTTTTTTTTTCTTTNNNNN
NCCCCCCCCCCCCCCTCTTCTCCCCCCCCCCNNNCCCCCCCCCCNCCNCC
CCCCACCCCCCCCCCCCCCCCCCCCCCCACAACCCCCCCCCACCCTCCTA
CAGCCCCCCCCCCCCCNCCCCCNNTTAACTCTCCCCCCCCCCCCCCCCCC
CGGNCGCCCCCCCCCCCCGCCCCGCNGNCCCGCCCCCCCCCCCCCCCCAC
CCCCCCCAAAAACCCCCCCCACCCCCCCCCCTCTCACCCCCCCCATATTT
CTCCCCCCCCCCCTACCCCCCCCCCCCCGCCGCACCCCCCATGTACACCC
CCCCCGCCCCCCACCCCCAACGCCCCCCCGCCTCCCCCATCCTCACCCCC
CCCCCCCCCCCCATNACTTGCCCCTCCCCCCCCCACCCCCCCCCTCAACC
CCACCCCCCCCCCCCTNTTTGCCCCCCCCCCCCCCCACCCTCCCCCCCCC
CCCATCCTACTTCCCCCTCCACCCCCCCTCCCNCCTTCATGCTCCCCCCC
CCCCCCCCCCCCCCCACTTAT
NNNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCATGTTCTGAACTCTTACACTT
TATTCTTTCTGTGATTACTGTTGCTATTTCCTCTTGTGGCCCTGCTTAGT
GTCTGGGGCCATCTGACATGTTACTCTTCAAAGCTTATACTCTTCCGGCC
AGTCCTCAGAATGAAATCATCAGAGGTTTCCATTTTCTTAGACTATGTGT
GTCTCACATAGAGATAGACTTGGCACATCCATCCATTTGATGTGTGCAGC
TTCTTTAACTCTCTCTCTTAATAGTGTTTTTTGTATCATGTTCAAGCCTA
ACCACATGGAGATGTGTTTGTGGGCTTGTGACTGCTCTAAACGTTTGGAA
ACTAGTGATTTTTAAATTGGTTTATGTGGGTCAAATAGTAACTTATTTGG
AACTGATAGCGTCCAAGTGTTTAATGGGTATGTTCTTAAAACTGGATCCA
ATGCTANGGAAGAAACTCTAGGCTGGAAAGGGGGCCAGAAGAAACCCAAC
CCCTTAAAAAAAAACCCACAACTTGGTGGNNNNNNNNNNNNNNNNTNNNN
NCNANCNCCNCCTTCTCCTCATATTTTTTCTTTGTTTCTCTACTTCTTCC
TTTCCTCTCTTTTACTCATTTCCCCCCCTCCCATTATCCTATATTTTCTC
TTAATTTCTATTCGTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a08.g1 MSMg01no489_a08.g1 CHROMAT_FILE:
MSMg01no489_a08.g1 PHD_FILE: MSMg01no489_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:06 2005
         (431 letters)



>mm_chr10_91045028_91045857
          Length = 830

 Score =  793 bits (410), Expect = 0.0
 Identities = 425/430 (98%), Gaps = 1/430 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatgttctgaactcttacactttattctttctgtgattactgttgctatttcctcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatgttctgaactcttacactttattctttctgtgattactgttgctatttcctcttg 260

                                                                       
Query: 61  tggccctgcttagtgtctggggccatctgacatgttactcttcaaagcttatactcttcc 120
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccctgcttagtgtatggggtcatctgacatgttactcttcaaagcttatactcttcc 320

                                                                       
Query: 121 ggccagtcctcagaatgaaatcatcagaggtttccattttcttagactatgtgtgtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccagtcctcagaatgaaatcatcagaggtttccattttcttagactatgtgtgtctca 380

                                                                       
Query: 181 catagagatagacttggcacatccatccatttgatgtgtgcagcttctttaactctctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagagatagacttggcacatccatccatttgatgtgtgcagcttctttaactctctct 440

                                                                       
Query: 241 cttaatagtgttttttgtatcatgttcaagcctaaccacatggagatgtgtttgtgggct 300
           ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaagagtgttttt-gtatcatgttcaagcctaaccacatggagatgtgtttgtgggct 499

                                                                       
Query: 301 tgtgactgctctaaacgtttggaaactagtgatttttaaattggtttatgtgggtcaaat 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtgactgctctaaacttttggaaactagtgatttttaaattggtttatgtgggtcaaat 559

                                                                       
Query: 361 agtaacttatttggaactgatagcgtccaagtgtttaatgggtatgttcttaaaactgga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtaacttatttggaactgatagcgtccaagtgtttaatgggtatgttcttaaaactgga 619

                     
Query: 421 tccaatgcta 430
           ||||||||||
Sbjct: 620 tccaatgcta 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space:   346462
Effective search space used:   346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)