BAC Information

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BAC

Clone NameMSMg01-489B08
Chromosome10 (Build37)
Map Location 82,709,365 - 82,709,523
singlet/doubletsinglet
Overlap geneSlc41a2
Upstream geneLOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
Downstream geneD10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489B08.T7 (MSMg01no489_b08.b1)MSMg01-489B08.TJ (MSMg01no489_b08.g1)
ACCAG567653AG567654
length689702
length of high quality
(start - end)
49 (77 - 125)159 (78 - 236)
definitionCHROMAT_FILE: MSMg01no489_b08.b1 PHD_FILE: MSMg01no489_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005CHROMAT_FILE: MSMg01no489_b08.g1 PHD_FILE: MSMg01no489_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGGCTTATAATTGCGGCGGCTAACGACTCCTATTCGGAGAGGTGGG
CGGAATTCTTTTCGCCAGCTTGGTGATCTTCCTGTGTGCGTTTTTCAAGG
CTAACCCTAAACTCAAGTATACTCAGTTNANNNNNNNNNNAAAANNATTT
TNNTNCCCNTTNNTTTTTTTTTTTTTTTTCTTCCCCCCTCCCTTTTCCTN
NTNNNNNAACTTCTTCAGAGATCTGGCTNNNGGAACCTTATGGGGGGNNN
CATTTTTTAAAGATGGGGTTTTAATAAANCCCCGGGGCCGGGGGGGGGGG
CGCCATGCCCTTTTAATTCCCGGCACTTGGGGGAGGGCAGAGGGCAGGGC
GGATTTTCTGGGGTCGGAGGGCCGGCGGGGCTATAAAGGGAGGTTTCCCG
GGAAGGGCCGGGGGGTTTAACGGGAAAAAACCCGGGGTTTTGTGAACCCC
CCCCCCCCCCAAACCCGGGGGGGGGGAAAGGGGAAGGGGGGTTGGGGGGT
NTAAAAGAGGGGCTTTTTTTTGGGGGGGGGGGGGGCCCCTCCCCGGGGGG
GGGGGGAAATCTGGGGGGGGCTCCCCAAGGGGGAAAAAAAGGGGGGGGGG
GGATAAAACACCCCCCCCCCTAGAGAGGGGGGGGGGGGGACACACAACAA
GGGGGGGGGGGGGGAAAAACGGGGGGGCGGGGGGTTTTN
NNNNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTACCAAAAAAATTCGGAGACTAAGACACAGCTTTC
AGTAAAATGAGAATCTCTATGACTAAATACTCATTTTGCAAGTATGTATT
AGCTGAGCTTGCAATGATGAATAAAGCAGTCCCTGGAAAGAGCCTGACCT
GCCTATATCTCCCCTCTCCATCCACTGGCTACACCCCNNNTTCCNNTCTC
CATNCNCTACTGGGCTACATNCTCCCCNCTCCATCCATTGGGCTACACCC
NCTTCCTCTCCATCCACTGGGCTACATCCCCTCTCTCTCCATCCACTNGA
CTACATCCCCCCTCTCTCCATCCACTGGGCTACCATCTCCCCCCCTCCAT
CCCCACTGGGGCTACATGCCCCTCCCCCCGCCCCAGTCTATCCACTGGTA
AAAGTAGAGGGGGACCTTTAGCAAGCATTAGCCAAGACCTTANCCAGCAG
ATAAGGGGAGTAAGCCCTAATTAAACCGGAAGGGGGTTTGTTGGGGGACA
ACACCCCCAAAAGGCGCTTTTTGTCCCCCCCCGCCCGNAGAAACNCCCTC
GGGTCATAAGAAAAGGTTTTTTTTTGTTTTCGCCCCCCCCCCCCCNNTGT
GGGGGAGGGCCCGCCCCCCCCCTTTCNAAAAAAAAACACCACCCCCCCCG
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_b08.g1 MSMg01no489_b08.g1 CHROMAT_FILE:
MSMg01no489_b08.g1 PHD_FILE: MSMg01no489_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:11 2005
         (159 letters)



>mm_chr10_82709165_82709723
          Length = 559

 Score =  292 bits (151), Expect = 7e-84
 Identities = 157/159 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcggagactaagacacagctttcagtaaaatgagaatctctatgactaaatactcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggagactaagacacagctttcagtaaaatgagaatctctatgactaaatactcatttt 260

                                                                       
Query: 61  gcaagtatgtattagctgagcttgcaatgatgaataaagcagtccctggaaagagcctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaagtatgtattagctgagcttgcaatgatgaataaagcagtccctggaaagagcctga 320

                                                  
Query: 121 cctgcctatatctcccctctccatccactggctacaccc 159
           |||||||| ||| ||||||||||||||||||||||||||
Sbjct: 321 cctgcctacatcccccctctccatccactggctacaccc 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)