BAC Information

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BAC

Clone NameMSMg01-489J23
Chromosome10 (Build37)
Map Location 45,037,210 - 45,166,992
singlet/doubletdoublet
Overlap genePopdc3, Bves, Lin28b
Upstream geneAtg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep
Downstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489J23.T7 (MSMg01no489_j23.b1)MSMg01-489J23.TJ (MSMg01no489_j23.g1)
ACCAG568061AG568062
length773761
length of high quality
(start - end)		540 (73 - 612)325 (327 - 651)
definitionCHROMAT_FILE: MSMg01no489_j23.b1 PHD_FILE: MSMg01no489_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:55 2005CHROMAT_FILE: MSMg01no489_j23.g1 PHD_FILE: MSMg01no489_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,037,210 - 45,037,749)(45,166,668 - 45,166,992)
sequence
NNAAACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGATGCGC
GGAATTCATTTAATATCGGGGGCAGAAAAAAATGTGATTGAAAGAACTAG
AGAGATTAAGTGGTTAAGGGCACTGGCTGTTCTTGCACAGGACCTGGGTT
CAGTTCCCAGCACCCACATGGCTGCCCACAACCATCTCTAAGTCCAGTTC
CAGTGGATCTGATGCCCTCTTCTGGCCTCTGTGGGCACTGCACACATGTG
GTGTGAGTACATACATGGAGGCCAAACACTCATACACATAAATATAAACC
TTTACTAATCATGTTTTAATCTGTTGCTTTCTAGTTTTGTTTTACACACG
TCTCTTGTGTTTTCTAGGTAACTCTCACAGCAGACACCGATTGCCGATAT
GTGTCTTGGAGGAGAAAAAAATTGTATCTACTCTTTGCGCAGCATCGGTA
CATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAAC
TCTATGCCTTGAACGACAGGGTGTACATAGGAAAGAAACATCACTATGAT
ATTCGGTTACCCAACTACTACCAGATGTCAACTCCAGACTTGTCCAGATC
ACCCCTAACAGAACAGTTCCGGAATTCCAGAACACATTGTAANCAATGAC
ATCAAAACCTGAAGTTGTGTGACTGCTGCACAAAGACTTCATCATTCCCC
CCAGACAATTCAGAATCAAGATGCCATTGCCCGCTGGTTACTAAATCATT
TCAACTTCTGCATTGCAAATAAA

NCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGATTAAAGGCAAGCACCACCACT
ATCTGGCTGAATTCTGCTATCTTTAACAATTAACTAGTCAGATGTTTCAA
TCTTTATAATATAGTTGTTTGGAGCTCCATGAAATGTTGTGAAGTATTTG
TTTATAGGCTTAAATGACTTGATTAATCAGTGAATGTAACCAAGATAACT
TATGTATATTGCAGTTGGCAGTGGCACTGAGAGAAGTTTTATTTGAAGAA
GGAAGATGATTTATGTAACTTTATTACAAATGAGGAAATGATACGAGCAT
TGTGAGCTAGAAACAGATTTTTGATCTTGAAAATGTTATGTGCCATGGGG
AAATTTCCAGAAACCACTCTCAACTTCATATTTGTAAATTGATTTCAGTG
TACTCAAGTGTATGTGATCTTTTCCATGGCTGGAAGGACCTATGCTGGCC
TGAGAGAAAGCTGCAAATGCATTTTATACTGTGCCCTGCAATGTAGAATT
TCAAAATCTGTTAAAAGAATAGTTTCCTTACTATTAAAGGAAACCATCTT
TATATTGTTTTTAAGTGTTCCTTGCAGCACAGTGACTAGTTAGTTCATGC
TATGTTTAGCCTGTCTACATGTATTCACTACTTGATAGACTTATACCTTC
TCTACCAAACATTGGTATTTCCCATCTGCACACAGACTGCATTAATCTTT
TCTAATGAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_j23.b1 MSMg01no489_j23.b1 CHROMAT_FILE:
MSMg01no489_j23.b1 PHD_FILE: MSMg01no489_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:55 2005
         (540 letters)



>mm_chr10_45037010_45037949
          Length = 940

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaaaaatgtgattgaaagaactagagagattaagtggttaagggcactggctgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaaaaatgtgattgaaagaactagagagattaagtggttaagggcactggctgttc 260

                                                                       
Query: 61  ttgcacaggacctgggttcagttcccagcacccacatggctgcccacaaccatctctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ttgcacaggacctgggttcagttcccagcacccacatggctgcccacaaccatctgtaag 320

                                                                       
Query: 121 tccagttccagtggatctgatgccctcttctggcctctgtgggcactgcacacatgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagttccagtggatctgatgccctcttctggcctctgtgggcactgcacacatgtggt 380

                                                                       
Query: 181 gtgagtacatacatggaggccaaacactcatacacataaatataaacctttactaatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgagtacatacatggaggccaaacactcatacacataaatataaacctttactaatcat 440

                                                                       
Query: 241 gttttaatctgttgctttctagttttgttttacacacgtctcttgtgttttctaggtaac 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gttttaatctgttgctttctagttttgttttacacatgtctcttgtgttttctaggtaac 500

                                                                       
Query: 301 tctcacagcagacaccgattgccgatatgtgtcttggaggagaaaaaaattgtatctact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcacagcagacaccgattgccgatatgtgtcttggaggagaaaaaaattgtatctact 560

                                                                       
Query: 361 ctttgcgcagcatcggtacatctcccgcctgttttcggttttaattggcagtgacattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgcgcagcatcggtacatctcccgcctgttttcggttttaattggcagtgacattgc 620

                                                                       
Query: 421 agataaactctatgccttgaacgacagggtgtacataggaaagaaacatcactatgatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agataaactctatgccttgaacgacagggtgtacataggaaagaaacatcactatgatat 680

                                                                       
Query: 481 tcggttacccaactactaccagatgtcaactccagacttgtccagatcacccctaacaga 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcggttacccaactactaccatatgtcaactccagacttgtccagatcacccctaacaga 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no489_j23.g1 MSMg01no489_j23.g1 CHROMAT_FILE:
MSMg01no489_j23.g1 PHD_FILE: MSMg01no489_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:55 2005
         (325 letters)



>mm_chr10_45166468_45167192
          Length = 725

 Score =  621 bits (321), Expect = 0.0
 Identities = 324/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgaggaaatgatacgagcattgtgagctagaaacagatttttgatcttgaaaatgt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caaatgaggaaatgatacaagcattgtgagctagaaacagatttttgatcttgaaaatgt 466

                                                                       
Query: 61  tatgtgccatggggaaatttccagaaaccactctcaacttcatatttgtaaattgatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tatgtgccatggggaaatttccagaaaccactctcaacttcatatttgtaaattgatttc 406

                                                                       
Query: 121 agtgtactcaagtgtatgtgatcttttccatggctggaaggacctatgctggcctgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtgtactcaagtgtatgtgatcttttccatggctggaaggacctatgctggcctgagag 346

                                                                       
Query: 181 aaagctgcaaatgcattttatactgtgccctgcaatgtagaatttcaaaatctgttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaagctgcaaatgcattttatactgtgccctgcaatgtagaatttcaaaatctgttaaaa 286

                                                                       
Query: 241 gaatagtttccttactattaaaggaaaccatctttatattgtttttaagtgttccttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gaatagtttccttactattaaaggaaaccatctttatattgtttttaagtgttccttgca 226

                                    
Query: 301 gcacagtgactagttagttcatgct 325
           |||||||||||||||||||||||||
Sbjct: 225 gcacagtgactagttagttcatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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