BAC Information

Click to search

BAC

Clone NameMSMg01-489O04
Chromosome10 (Build37)
Map Location 99,132,677 - 99,133,125
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
Downstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O04.T7 (MSMg01no489_o04.b1)MSMg01-489O04.TJ (MSMg01no489_o04.g1)
ACCAG568256AG568257
length1,030720
length of high quality
(start - end)
---497 (88 - 584)
definitionCHROMAT_FILE: MSMg01no489_o04.b1 PHD_FILE: MSMg01no489_o04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:17 2005CHROMAT_FILE: MSMg01no489_o04.g1 PHD_FILE: MSMg01no489_o04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNNNNNNCC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNN
NNCCNCNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNCNCC
CCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNCCCCCNCCCCCCNNCNNNN
CCCCNNNNNNCCCCNNNNAAAAAAAAAATTNTNNNCCCCNNNNCCCCCCC
CCNNNNAAANNNACCNNAACTTTCCNNNNTTATTTTTCTTCCAAAAAAAA
CANAAACCCCCNCCGNNNAAAANNTCAANGNCATTTTTCCCAATACCAAA
TCCTCAAACANNNCCCTGGNNNNNTTAACCNNGNAAAACCCCTTTTATTA
ACCCCNTTTAAACCCCCNNCAANNTTTCCTGGGNTTCCCCCNNAAAAATG
AAAAGGAAAACCTTCCCCCTTCCCCCCCCTTTAAAAAAAAAAAAAAATAC
GAATAAAGAAATAAAAAAGAAAAAAAAAAAAAACAAAAAAAGAAAAAAAA
AAAAAGAAAAAAAAAAATAAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAATAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAATGAAA
AAAAAAAAAAAAAAGAAAAAAAAGAAAAATAAAAAACAAAAAAATAAAAA
GAAAAATAAAAAAAACCGANNNNNCCCCCCNNAAAAACCCCCCCCCCAAC
CCCCCCCCNAATAAATATAAAAAAAAACCCCCCCCCCCCCCNNNAAAAAA
CCACCTTTATAAAAAAACAAAACCACACAAAAANNATACCCCCTACACAA
TTCCTCCCCCCCCCAAAAAAAAAAAATAAG
CCTCTTTCACGATGATAGTGGGAGGCCTGGNGGTCGCCTGATCGNCACGG
GGAGGNGACACTANAGAATACCAAAAAAAGGCAGAGNCACCTTGAGGCAA
GATCTAGNCTTAAACAAACATAATACTGACAGTGGTAGAAAATCTCCAGG
TTGCATGAGGTTATGAGGCTTTAGGTTCAAAGCTCATTACTGAAAAAAAA
ATTTTTCAGTTTTTTGACATTTTTTCTCTAATAATGCTTTTCCTTTAAAT
ATTTTCTTATATTAAAATCACTCTTTGTGTTTCTTCTGCTTTCTGTTTTT
AATTTCTTTTCAGTTGTTTTATTTTTTTTTCTTCTGCTCCTAAGCACTAT
CTGTCTTTTCTGTGTATGGGGAAGGCACTCCCTTCTTTAAAGTGTGTGCT
AAATCTTCAAACAGATGTATAAACACCCTCTTTACATGGATCAAGCATTT
CTTAAAATAACTAACACATTCTATGGGTCTCTATGTCCAATTTTATATTA
TGTAATTACCTTGCATTTATTAATGTTGTTTCTTTTACTCTCTGGATAAA
CTAAATCCTTTGACATTTCATTTTTCTTGTTTTGTTTTGCTTTGTTTTTT
GAAGTTGCATGATCTTATTTATATGTTGGAAAATAAATGTTGACTTTTCA
TAGTCTAAAGATACTACTTTTATTCTTGGACTGAATAATATAATGACCTT
GCGTTCTATTTTAATTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o04.g1 MSMg01no489_o04.g1 CHROMAT_FILE:
MSMg01no489_o04.g1 PHD_FILE: MSMg01no489_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:17 2005
         (497 letters)



>mm_chr10_99132229_99133125
          Length = 897

 Score =  830 bits (429), Expect = 0.0
 Identities = 444/449 (98%)
 Strand = Plus / Minus

                                                                       
Query: 49  tagaaaatctccaggttgcatgaggttatgaggctttaggttcaaagctcattactgaaa 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tagaaaatctccaggttgcatgaggttatgaggctttaggttcaaagctcattactgaaa 838

                                                                       
Query: 109 aaaaaatttttcagttttttgacattttttctctaataatgcttttcctttaaatatttt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aaaaaatttttcagttttttgacattttttctctaataatgcttttcctttaaatatttt 778

                                                                       
Query: 169 cttatattaaaatcactctttgtgtttcttctgctttctgtttttaatttcttttcagtt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cttatattaaaatcactctttgtgtttcttctgctttctgtttttaatttcttttcagtt 718

                                                                       
Query: 229 gttttatttttttttcttctgctcctaagcactatctgtcttttctgtgtatggggaagg 288
           |||||| |||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gttttagtttaaattcttctgctcctaagcactatctgtcttttctgtgtatggggaagg 658

                                                                       
Query: 289 cactcccttctttaaagtgtgtgctaaatcttcaaacagatgtataaacaccctctttac 348
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 657 cactcccttctttaaagtgtgtgctaaatcttcaaacagatgtataaagaccctctttac 598

                                                                       
Query: 349 atggatcaagcatttcttaaaataactaacacattctatgggtctctatgtccaatttta 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atggatcaagcatttcttaaaataactaacacattctatgggtctctatgtccaatttta 538

                                                                       
Query: 409 tattatgtaattaccttgcatttattaatgttgtttcttttactctctggataaactaaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tattatgtaattaccttgcatttattaatgttgtttcttttactctctggataaactaaa 478

                                        
Query: 469 tcctttgacatttcatttttcttgttttg 497
           |||||||||||||||||||||||||||||
Sbjct: 477 tcctttgacatttcatttttcttgttttg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)