BAC Information

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BAC

Clone NameMSMg01-490A07
Chromosome10 (Build37)
Map Location 129,049,403 - 129,050,057
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796
Downstream geneGA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490A07.T7 (MSMg01no490_a07.b1)MSMg01-490A07.TJ (MSMg01no490_a07.g1)
ACCAG568357AG568358
length743757
length of high quality
(start - end)		692 (52 - 743)651 (83 - 733)
definitionCHROMAT_FILE: MSMg01no490_a07.b1 PHD_FILE: MSMg01no490_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:28 2005CHROMAT_FILE: MSMg01no490_a07.g1 PHD_FILE: MSMg01no490_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGGGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGAGTTTTTACAGTAGATATTTTCTTTACCATTTCAAAT
GTTAGCCCCTTTCCTAGTTTTTCCTCTGAAAACCCCTATTCCCTCCTCCC
TCCCCCTGTTCATCAGTCCACCCCCTTCCAAATCCTGGCTCTGGCATTCC
TCTATACTGAGGCATAGAACCTTCACAGGACCAAGGACCCCTCTTTCCAT
TGATGGCCGACTAGGCCCTAGGTCATCCTCTACTACATATGCACCTAGAG
CCATGAGTCCACCATCTGTTTTCTTTGATTGGTGGTTTAGTTCCAGGGAG
CTCTGGGGTTACTGGTTGGTTCACATTTTTGTTCCTCCTATGGGGCTGCA
AACCCTTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCCTTAGAGACCC
TGTGCTCTGTCAAATGGATGGCTGTGAGCATCCACTTCTATATTTGTCAG
GTACTGGCAGAACTTCTCAGGGGAGAGCTATATCAGGTTCCTGTCAGCAA
GCTCTTCTTGGCATGCACAATAGTGTCTGGGTTTGGTGGTTGTATATGTG
ATGGGTCTCCAGGTGGGACAGTCTATGAACAATCATTTCTTCTGTCTCTG
CTCCACAGTTTGTCTTTGTAACTCCTTCCATGGGTATTTTGTTCCCCATT
CTAAGAATGATTGAAGTATCCATACTTTGGTCTTCCTTCTTGA

GGGCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAATTAAAATTCATGT
ATGCATGCAATAACAACTAGTAAAAAATAAGACATCAATTTAAAGGAGAG
GGAGAGGAATATAGAGGAAGCCTTGGAAGTAGGAAAGGGAATGGATAAAT
GCAATTATAATTTCAAAAATAATCAAAAATATTTTTAAAATTAAAAAGAA
AGGTCATGTACAGATAAAGCTCTGACTCTATCCATTGTAAGACATTTGGG
GCAGAAATAAAATAAATTGCTAAATAGTTCAATGCCAGGGAAAACATTGA
TTAAAACAATTAGTCATATTTTATCTAAACAATTGGGTGTAAATTGTGTG
CCTACCTGGTAGAAAGCATAGGATGGAAAGAAGAGTCATTAGAGACCAAG
TAACTTTGGGATACATTTAAAACATCTAAGGTAAGATACTCAGTTGTATA
TATAATGAGGATCCAGGACCAATGACTTAAGTGTGGAAATCTTAGATATT
GAAGAAAATACTTTGGAAAAGTCAGGCAACAAGTACTAACCATATTAAGT
AAAAGGAAGATTCAAAAGTCACAGTTAATGAGGGGAGGGTTGGTGACTTC
AAAGAGAGATTTTATACACAAAAACAGAGGAGAGGCCACATATGAAGCTG
GAAGACCCTGAAGCTTCATGTCATTTGTGACCAAGTAAACACAAAAGAGA
AAGTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_a07.g1 MSMg01no490_a07.g1 CHROMAT_FILE:
MSMg01no490_a07.g1 PHD_FILE: MSMg01no490_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:28 2005
         (651 letters)



>mm_chr10_129049038_129050092
          Length = 1055

 Score = 1232 bits (637), Expect = 0.0
 Identities = 649/655 (99%), Gaps = 4/655 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    agtaattaaaattcatgtatgcatgcaataacaactagtaaaaaataagacatcaattta 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 agtaattaaaattcatgtatgcatgcaataacaactagtaaaaaataagacatcaattta 961

                                                                        
Query: 61   aaggagagggagaggaatatagaggaagccttggaagtaggaaagggaatggataaatgc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  aaggagagggagaggaatatagaggaagccttggaagtaggaaagggaatggataaatgc 901

                                                                        
Query: 121  aattataatttcaaaaataatcaaaaatatttttaaaattaaaaagaaaggtcatgtaca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  aattataatttcaaaaataatcaaaaatatttttaaaattaaaaagaaaggtcatgtaca 841

                                                                        
Query: 181  gataaagctctgactctatccattgtaagacatttggggcagaaataaaataaattgcta 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  gataaagctctgactctatccattgtaagacatttggggcagaaataaaataaattgcta 781

                                                                        
Query: 241  aatagttcaatgccagggaaaacattgattaaaacaattagtcatattttatctaaacaa 300
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 780  aatagttcaatgccagggaagacattgattaaaacaattagtcatattttatctaaacaa 721

                                                                        
Query: 301  ttgggtgtaaattgtgtgcctacctggtagaaagcataggatggaaagaagagtcattag 360
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  ttgggtgtaaattgtgcgcctacctggtagaaagcataggatggaaagaagagtcattag 661

                                                                        
Query: 361  agaccaagtaactttgggatacatttaaaacatctaaggtaagatactcagttgtatata 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  agaccaagtaactttgggatacatttaaaacatctaaggtaagatactcagttgtatata 601

                                                                        
Query: 421  taatgaggatccaggaccaatgacttaagtgtggaaatcttagatattgaagaaaatact 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  taatgaggatccaggaccaatgacttaagtgtggaaatcttagatattgaagaaaatact 541

                                                                        
Query: 481  ttggaaaagtcaggcaacaagtactaaccatattaagtaaaaggaagattcaaaagtcac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  ttggaaaagtcaggcaacaagtactaaccatattaagtaaaaggaagattcaaaagtcac 481

                                                                        
Query: 541  agtt----aatgaggggagggttggtgacttcaaagagagattttatacacaaaaacaga 596
            ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  agttaggcaatgaggggagggttggtgacttcaaagagagattttatacacaaaaacaga 421

                                                                   
Query: 597  ggagaggccacatatgaagctggaagaccctgaagcttcatgtcatttgtgacca 651
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  ggagaggccacatatgaagctggaagaccctgaagcttcatgtcatttgtgacca 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1055
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1045
Effective search space:   669845
Effective search space used:   669845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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