BAC Information

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BAC

Clone NameMSMg01-490H12
Chromosome10 (Build37)
Map Location 129,132,605 - 129,132,946
singlet/doubletsinglet
Overlap genenone
Upstream geneRab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803
Downstream geneOlfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490H12.T7 (MSMg01no490_h12.b1)MSMg01-490H12.TJ (MSMg01no490_h12.g1)
ACCAG568697AG568698
length766751
length of high quality
(start - end)		352 (75 - 426)667 (85 - 751)
definitionCHROMAT_FILE: MSMg01no490_h12.b1 PHD_FILE: MSMg01no490_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:04 2005CHROMAT_FILE: MSMg01no490_h12.g1 PHD_FILE: MSMg01no490_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATGC
GCGGAATTCCTGGTTTTCTAATTTAAAAAACGAAATATCAAATGTAATAT
TTTAATTAAAAACTTAAAGTTTAAACTAACACATATTTATAGAAGTGAGC
ATATAATAGCTATAGTAGTATAAAGGGACATATAGAATGGTTTTTATAAT
TCCCACTGGACTCCTATTTTGTTTACATTTTAAATTAGCCAATTTAATGC
TCTGTAATGTAGACTTTGTGATAGTTTGTCTATGTTTTTACTCAAAAAAT
ATATATGTACTTACATACCATATTTTATTAACTATATCCAATTCTACCTC
TATCATCTCTTTCACTACATATATGTAAGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTATTANTGTANGTATTNNNNNNNTTNNNNNNNT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTTTTNTTTTT
TTTTTTTTTTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTT
TTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTNTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTNNTTTTNTTTTTTT
TTTTTTTTTTTTNTTTTTTNNTTNNNNTTNTNTNNTTTTTNTTTTTTNTT
TTTTTTNTTTTNNTTTTTNNTTTTTTTTTTTTNTTTTTTTTTTNTTTTTT
TTTTTTTTTTTNTTTT

NNNNNNGGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATTGGCCATATT
ATGGGTCACAAAACAGGTCTCAACAGATACAAGAAGGTTGAAATAATCCC
ATGCATCTTATCAGATCACCACAGACTATGGATGGTTTTCAATAACAATA
TAAACAACAAAAAGCCCACATACACATGGAAGCTAAACAATGCTCTACTC
AATGATAACTTGGTCAAGGAAGAAATTATGAAAGAAAGAAATTTGTTGGG
GCCGGCCTGCAGCTCTCATGTCTGGGTTCAAGCCTGGAATGCATCTTGGA
ACTGAAAGAAAAGAGGGAATCTAGGCGGGTAAACAGAGAAATGGAGTCAA
GACTGTATTCTGATCAAGACTCAACTTTAATGTCGGCAAACATGCTTTAT
AAAGAAGAGGGGAGGCCCATTCCCAGTCACACAAAGTTCCTTTGAAGTTG
TCAGATCAGCCTTTTAGTAGGAACCCGGGAAAATCACAGTTCCAAGCTAA
CTCCAGTAGATCTTGGAGAACTGGTTTGGCCTCAGGCAGGTAGCAGGTAG
TGGCACATCAAAGGAGAGTGATGAGAAGCAGCACAGCAGGTGGCTCTGCC
TAAGTGGCAGATGGTCACAGCCAGCCTTGCTAGGCTGGAAGGAGGTAACA
GAAATTAAAGACTTTTTAGAATTTAATGAAAATGAAAGGCACACATATCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_h12.b1 MSMg01no490_h12.b1 CHROMAT_FILE:
MSMg01no490_h12.b1 PHD_FILE: MSMg01no490_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:04 2005
         (352 letters)



>mm_chr10_129132404_129133154
          Length = 751

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%), Gaps = 1/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   aaaaacgaaatatcaaatgtaatattttaattaaaaacttaaagtttaaactaacacata 61
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aaaaatgaaatatcaaatgtaatattttaattaaaaacttaaagtttaaactaacacata 261

                                                                       
Query: 62  tttatagaagtgagcatataatagctatagtagtataaagggacatatagaatggttttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttatagaagtgagcatataatagctatagtagtataaagggacatatagaatggttttt 321

                                                                       
Query: 122 ataattcccactggactcctattttgtttacattttaaattagccaatttaatgctctgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ataattcccactggactcctattttgtttacattttaaattagccaatttaatgctctgt 381

                                                                       
Query: 182 aatgtagactttgtgatagtttgtctatgtttttactcaaaaaatatatatgtacttaca 241
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 382 aatgtagactttgtgatagtttgtctatgtttttactcaaaaa-tatatatgtacttaca 440

                                                                       
Query: 242 taccatattttattaactatatccaattctacctctatcatctctttcactacatatatg 301
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 taccaaattttattaactatatccaattctatctctatcatctctttcactacatatatg 500

                                                      
Query: 302 taagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 344
           ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 501 taagtgtttgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 751
Length adjustment: 9
Effective length of query: 343
Effective length of database: 742
Effective search space:   254506
Effective search space used:   254506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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