BAC Information

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BAC

Clone NameMSMg01-490L01
Chromosome10 (Build37)
Map Location 82,355,312 - 82,355,682
singlet/doubletsinglet
Overlap geneTxnrd1
Upstream geneBC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Eid3
Downstream geneEG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490L01.T7 (MSMg01no490_l01.b1)MSMg01-490L01.TJ (MSMg01no490_l01.g1)
ACCAG568864AG568865
length756749
length of high quality
(start - end)
372 (328 - 699)638 (76 - 713)
definitionCHROMAT_FILE: MSMg01no490_l01.b1 PHD_FILE: MSMg01no490_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:21 2005CHROMAT_FILE: MSMg01no490_l01.g1 PHD_FILE: MSMg01no490_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXANAATCTACAATGGGG
CGGAANTCAATAAAATTCCTAAAAGAGAANGAGAATTTAAAAGGTATGTA
AATTAGCTGCTAGTTTTTTATTAACTAAAGCTGTCAAATGTCTCAAGTTT
CTGACCCTTCCTAAAAGGGTCAGACAAAGCCAGCCTGAGGTAGTTTTTAC
AAAACCTACTCTGCTCCTGTCATGCACTGCAAACACCCAGGCCACCTTCA
GCCTAGCTGCACCTTCTGTGTGTGAAGGACCCTGGGGAGAAAGAGCTACC
TTCTCAGATGCAGCAGTCTGTTTTTTTTTGCTATAGTCTCAGACACTCAC
CTCCTACCTAAGCGCTTCCTGTGGCCTTCCTGTTGCGAGCTCAGCTAACT
TTGCTGCAAGCCAAGCTGAGAAGCTAAGACCTGCCAGACTTCAATGAAAA
GCAGTTACTGAATAAGATCACGACTCAGGCTAGGAAGCCATGGGCCAAGT
CCTTGCAACTTGTTCTCAGCGTCCTTGTCTGTCAACAGGAGATGCTGCCC
TCAAGTTCCTCAGGAAAGAAAATGGAGACGCTGACACAGGGAGAACACAG
TGCCTGGTGCACACAGTAGGACCTCATGTAGCTAGTCAGTCTTAGGTCTT
GCCAACACTGACTCAAATTTGTCTGCAGTGTCGCCACTATACCCGTGTTC
CCCTCAGTTCCCTTCCCACAGTAGGACTGCAGCAGGCTGGAGACATTTTC
AGGCTG
CACTATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCTACCTTTACCTTTCA
AGTGCAGGGATTACAGACCTGTAACCTGACAGCTAGCATTGTAGGGTGTT
TTAGTCTGTAGACGAGTGTGGGGAACACTGACCTGGATGTCAGGCAGCAC
AGCAGTGTGGGAGATTCCACTCACAATATGTGAACAAATGTCAAACCAGG
GCTCAGGGCACCTCTCACTGACCAGGGATCCTGTCTCACCTCCCTAGCGC
TGGGATTGCAGCCATGTGCTGCTGTCCCCAGTTTGTAGTGCTCCTGCATG
AGTAGCAAGCACTTAACCACTGAACCAGCCCCCAGGGAAACATTTCCCAA
GCTGTTTTCACCAGAGTAAGGACTGGGCCTGGCACTCCTTTAAATGGCTC
AGATGTCCCCTTGATGCTATCCTTTGTTGATCGCTTATTTTCAGTGTTTT
GTTTCTTAAACTGGGGGAGAGGGGAAGTGACTGTGAGTGCAGGTGCTGGT
GGAGGATCTGCAGTCATGGGTGCTTGGGAGCCACACCCCCACATTCTGCA
AGAGCAGTAAACACTCCTAACCATTGAGCCCTCAGCCCCTTGCCTTTTTT
TATTTTTTTATTTTTTTGGNTTTTTTCGAGACAGGGTTTCTTTCTCTGTG
TAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_l01.b1 MSMg01no490_l01.b1 CHROMAT_FILE:
MSMg01no490_l01.b1 PHD_FILE: MSMg01no490_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:21 2005
         (372 letters)



>mm_chr10_82355111_82355882
          Length = 772

 Score =  702 bits (363), Expect = 0.0
 Identities = 369/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgctatagtctcagacactcacctcctacctaagcgcttcctgtggccttcctgttgcga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgctatagtctcagacactcacctcctacctaagcgcttcctgtggccttcctgttgcga 513

                                                                       
Query: 62  gctcagctaactttgctgcaagccaagctgagaagctaagacctgccagacttcaatgaa 121
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gctcagctaactttgctgtaagccaagctgagaagctaagacctgccagacttcaatgaa 453

                                                                       
Query: 122 aagcagttactgaataagatcacgactcaggctaggaagccatgggccaagtccttgcaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aagcagttactgaataagatcacgactcaggctaggaagccatgggccaagtccttgcaa 393

                                                                       
Query: 182 cttgttctcagcgtccttgtctgtcaacaggagatgctgccctcaagttcctcaggaaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cttgttctcagcgtccttgtctgtcaacaggagatgctgccctcaagttcctcaggaaag 333

                                                                       
Query: 242 aaaatggagacgctgacacagggagaacacagtgcctggtgcacacagtaggacctcatg 301
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaaatggagactctgacacagggagaacacagtgcctggtgcacacagtaggacctcatg 273

                                                                       
Query: 302 tagctagtcagtcttaggtcttgccaacactgactcaaatttgtctgcagtgtcgccact 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagctagtcagtcttaggtcttgccaacactgactcaaatttgtctgcagtgtcgccact 213

                      
Query: 362 atacccgtgtt 372
           |||||||||||
Sbjct: 212 atacccgtgtt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)