BAC Information

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BAC

Clone NameMSMg01-490M09
Chromosome10 (Build37)
Map Location 106,687,590 - 106,859,962
singlet/doubletdoublet
Overlap geneLin7a
Upstream genePpfia2, Olfr1556-ps1, 8430416H19Rik
Downstream geneMyf5, Myf6, Ptprq, EG628870, Ppp1r12a, Pawr, EG667814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490M09.T7 (MSMg01no490_m09.b1)MSMg01-490M09.TJ (MSMg01no490_m09.g1)
ACCAG568925AG568926
length746755
length of high quality
(start - end)
672 (75 - 746)673 (83 - 755)
definitionCHROMAT_FILE: MSMg01no490_m09.b1 PHD_FILE: MSMg01no490_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:27 2005CHROMAT_FILE: MSMg01no490_m09.g1 PHD_FILE: MSMg01no490_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,859,292 - 106,859,962)(106,687,590 - 106,688,263)
sequence
GGGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGAGAGGAGCC
GCGGAATTCTTTTACTCTCTGAGCTTGCCTTAGAATCACAGCTGGGACAA
GGTACGGAGTCTGCTTGCACTGTCTATTACCTTGATCAAAGGAAGAAACT
GAAATTTACTTCATTGGGTCCTTGTTGAAAAATTACAACCACTTTTCCCT
AACTTTTAACACCCCACTTATCGTATCTATGTTGAACTGCATGGAAGCAC
AGTCTTTTCTTTAAATGAATGACATCAGACATGTCGGAGACTCTGTATGT
GACTCTTGGGAATAGAGAAGTTTATGTAAAATTCATGGTTGAATTTGTTC
TTCCCTTTCCATCTTGCTTCAGGGAAATGTCAGAGATGCGCTGGGGGTTT
CTGTAAGTCTTTGGAGGGGTGTGTGTGTGTCCCTTTTGATTAAAATTCTA
GAGAAATACTTACATTTCAATGAGCTAAATTTCACTAAAGAGAACCAGCC
ATTTGTATGTAAGACCATGGAGACATATAACCTATCCCTTGGCTTCTGTG
CGTATGATGGATTGCTTCATTTTGACAAACAACCTGGCAAACATTCATCA
GCAGTACACGTTGTACAAATGAAGCAAAAAATTCAAAGACTTCTAAAAAA
CACCAGCATGAAGTATCTGATTATTTCATGGTTGCTTCTGACAACACTTG
TACTGATGTGAAATCATATATTAAGTTTGGTATTAACTAAACACTT
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTGCATTTCATACATA
AAACCATGGGACATGTTCCTGTTCTGTATGGTCTCAAAATAGTACTGAAA
AGATCAGGTGCAAGCAGCCTAGGGCATCTCTCCATTGTTTCTAGAAATAG
TGTTGACATCGATCTACTCAAGCAAAACTTAATACATGCCCAGTAAGCAC
CACCTACTGTGTGCTGGGCAACGTGTATCTCCTTTATTACCTCTTTCCAA
GAAACATTATATTTGTGTACCTCATGTTTACAGTGGTTGGCTTACTACAA
TAGAGTGGAGTCAATTCTTCAGGCATAAGAAATGTTTTAAAATTCTCATC
TATCATTTGTGCACCATTAGGAATTCTAAAGTCATCATAAAGTTGTGAGG
AATAGCAAACACATCTATTGCATGGCAAATACTGCTTCAGATCTTTTACA
TCATCTCATGTGATGCCCCCCAAAACGACTTATTGCTTGCAATCACATGT
ATAGGTGCAATCACACTGTAGTTTCACAGATGTGGAAATGAAGCAAGAGA
TAGCAAATTGTTTGGCTAATATTACACGGCCACTAAATTATGGACCAGGG
ACTCACAAAAAAGCATGCTGAATTCAAACTAAGGACTCTGTTAAAACTAC
ACTTTCACTGAGTGATGGGTAAATTATTAGCCAGGGATTTAACTTTGCTT
TTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_m09.b1 MSMg01no490_m09.b1 CHROMAT_FILE:
MSMg01no490_m09.b1 PHD_FILE: MSMg01no490_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
         (672 letters)



>mm_chr10_106859092_106860162
          Length = 1071

 Score = 1253 bits (648), Expect = 0.0
 Identities = 666/672 (99%), Gaps = 1/672 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgccttagaatcacagctgggacaaggtacggagtctgcttgcactgtctattaccttg 60
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 871 ttgccttagaatcacagctgggacaaggaacagagtctgcttgcactgtctattaccttg 812

                                                                       
Query: 61  atcaaaggaagaaactgaaatttacttcattgggtccttgttgaaaaattacaaccactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 atcaaaggaagaaactgaaatttacttcattgggtccttgttgaaaaattacaaccactt 752

                                                                       
Query: 121 ttccctaacttttaacaccccacttatcgtatctatgttgaactgcatggaagcacagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttccctaacttttaacaccccacttatcgtatctatgttgaactgcatggaagcacagtc 692

                                                                       
Query: 181 ttttctttaaatgaatgacatcagacatgtcggagactctgtatgtgactcttgggaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttttctttaaatgaatgacatcagacatgtcggagactctgtatgtgactcttgggaata 632

                                                                       
Query: 241 gagaagtttatgtaaaattcatggttgaatttgttcttccctttccatcttgcttcaggg 300
           |||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gagaagttca-gtaaaaatcatggttgaatttgttcttccctttccatcttgcttcaggg 573

                                                                       
Query: 301 aaatgtcagagatgcgctgggggtttctgtaagtctttggaggggtgtgtgtgtgtccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaatgtcagagatgcgctgggggtttctgtaagtctttggaggggtgtgtgtgtgtccct 513

                                                                       
Query: 361 tttgattaaaattctagagaaatacttacatttcaatgagctaaatttcactaaagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttgattaaaattctagagaaatacttacatttcaatgagctaaatttcactaaagagaa 453

                                                                       
Query: 421 ccagccatttgtatgtaagaccatggagacatataacctatcccttggcttctgtgcgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccagccatttgtatgtaagaccatggagacatataacctatcccttggcttctgtgcgta 393

                                                                       
Query: 481 tgatggattgcttcattttgacaaacaacctggcaaacattcatcagcagtacacgttgt 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 392 tgatggattgcttcattttgacaaacaacctggcaaacattcatcagcagtacatgttgt 333

                                                                       
Query: 541 acaaatgaagcaaaaaattcaaagacttctaaaaaacaccagcatgaagtatctgattat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 acaaatgaagcaaaaaattcaaagacttctaaaaaacaccagcatgaagtatctgattat 273

                                                                       
Query: 601 ttcatggttgcttctgacaacacttgtactgatgtgaaatcatatattaagtttggtatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttcatggttgcttctgacaacacttgtactgatgtgaaatcatatattaagtttggtatt 213

                       
Query: 661 aactaaacactt 672
           ||||||||||||
Sbjct: 212 aactaaacactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space:   702382
Effective search space used:   702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no490_m09.g1 MSMg01no490_m09.g1 CHROMAT_FILE:
MSMg01no490_m09.g1 PHD_FILE: MSMg01no490_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:27 2005
         (673 letters)



>mm_chr10_106687391_106688463
          Length = 1073

 Score = 1172 bits (606), Expect = 0.0
 Identities = 656/674 (97%), Gaps = 4/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tgcatttcatacataaaaccatgggacatgttcctgttctgtatggtctcaaaatagtac 63
           |||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||
Sbjct: 200 tgcatttcatacataaaaccatgggacaggttcctgttctgtaaggtctcgaaatagtac 259

                                                                       
Query: 64  tgaaaagatcaggtgcaagcagcctagggcatctctccattgtttctagaaatagtgttg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 tgaaaagatcaggtgcaagcagcctagggcatctctccattgtttctaggaatagtgttg 319

                                                                       
Query: 124 acatcgatctactcaagcaaaactt-aatacatgcccagtaagcaccacctactgtgtgc 182
           |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct: 320 acatcgatctactcaagcaaaatttaaatacacgcccagtaagcaccacctactgtgtgc 379

                                                                       
Query: 183 tgggcaacgtgtatctcctttattacctctttccaagaaacattatatttgtgtacctca 242
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tgggcaacgtgtatctcctttattacctctttccaagaaacatcatatttgtgtacctca 439

                                                                       
Query: 243 tgtttacagtggttggcttactacaatagagtggagtcaattcttcaggcataagaaatg 302
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agtttacagtggttggcttactacaatagagtggagtcaattcttcaggcataagaaatg 499

                                                                       
Query: 303 ttttaaaattctcatctatcatttgtgcaccattaggaattctaaagtcatcataaagtt 362
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 500 ttttaaaattctcatctatcatttgtgcaccattaggaattctatcgtcatcataaagtt 559

                                                                       
Query: 363 gtgaggaatagcaaacacatctattgcatggcaaatactgcttcagatcttttacatcat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtgaggaatagcaaacacatctattgcatggcaaatactgcttcagatcttttacatcat 619

                                                                       
Query: 423 ctcatgtgatgcccccc---aaaacgacttattgcttgcaatcacatgtataggtgcaat 479
           |||||||||||||||||   |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 620 ctcatgtgatgcccccccccaaaacgacttcttggttgcaatcacatgtataggtgcaat 679

                                                                       
Query: 480 cacactgtagtttcacagatgtggaaatgaagcaagagatagcaaattgtttggctaata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacactgtagtttcacagatgtggaaatgaagcaagagatagcaaattgtttggctaata 739

                                                                       
Query: 540 ttacacggccactaaattatggaccagggactcacaaaaaagcatgctgaattcaaacta 599
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttacaaggccactaaattatggaccagggactcacaaaaaagcatgctgaattcaaacta 799

                                                                       
Query: 600 aggactctgttaaaactacactttcactgagtgatgggtaaattattagccagggattta 659
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aggactctgttaaagctacactttcactgagtgatgggtaaattattagccagggattta 859

                         
Query: 660 actttgcttttacc 673
           ||||||||||||||
Sbjct: 860 actttgcttttacc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)