Query= MSMg01no490_p05.b1 MSMg01no490_p05.b1 CHROMAT_FILE:
MSMg01no490_p05.b1 PHD_FILE: MSMg01no490_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:41 2005
(323 letters)
>mm_chr10_53643310_53644032
Length = 723
Score = 605 bits (313), Expect = e-178
Identities = 319/321 (99%)
Strand = Plus / Plus
Query: 3 ttcataatggaatgccaatgtcttgatcttgtgcagtaacacaactttgtgcacaacttt 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttcataatggaatgccaatgtcttgatcttgtgcagtaacacaactttgtgcacaacttt 262
Query: 63 ggtaaaagtattgttaatgctgcttttaaactcaccattttgttttttctaattttgccc 122
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 ggtaaaagtactgttaatgctgcttttaaactcagcattttgttttttctaattttgccc 322
Query: 123 caaaagttgaaaatatacgagttaaaatttcttttttctttttgacaattaagagtcaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaaagttgaaaatatacgagttaaaatttcttttttctttttgacaattaagagtcaca 382
Query: 183 ggaaacgctttgcctcatttgttcttaatggatttttcctctcaactgtttgtataaaca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggaaacgctttgcctcatttgttcttaatggatttttcctctcaactgtttgtataaaca 442
Query: 243 gaatacactcacagttacatgggaacatttctagaaattagcagaaaaatacttcaaaca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gaatacactcacagttacatgggaacatttctagaaattagcagaaaaatacttcaaaca 502
Query: 303 gtatttcaaaagggcttttcg 323
|||||||||||||||||||||
Sbjct: 503 gtatttcaaaagggcttttcg 523
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_p05.g1 MSMg01no490_p05.g1 CHROMAT_FILE:
MSMg01no490_p05.g1 PHD_FILE: MSMg01no490_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:41 2005
(666 letters)
>mm_chr10_53798836_53799901
Length = 1066
Score = 1116 bits (577), Expect = 0.0
Identities = 646/671 (96%), Gaps = 10/671 (1%)
Strand = Plus / Minus
Query: 1 catgggaagttcctcaaagccagttgacaaatatttctgctataggatgttttaaaattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 catgggaagttcctcaaagccagttgacaaatatttctgctataggatgttttaaaattg 807
Query: 61 gggacttctgatatctctaagtaactgctaaaacaaaaatagatgtcttaacttggcccc 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 806 ggga-ttctgatatctctaagtaactgctaaaacaaaaatagatgtcttaacttggtccc 748
Query: 121 gcagagtcaaggtggacataaggattcaaccctgta----tagctactccttcctttctt 176
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 747 gcagagtcaaggtgggcataaggattcaaccctgtatagctagctactccttcctttctt 688
Query: 177 atttgcaggggtaacaggatttctataacacttttctactactttagccattccaaggta 236
||||| | ||||||| |||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 687 atttgtaagggtaacgggatttctataacagtattctactactttagcca-tccaaggta 629
Query: 237 aatataggggaagaaaaaacaaaaactcggcattataaatagactatgccctccaattta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aatataggggaagaaaaaacaaaaactcggcattataaatagactatgccctccaattta 569
Query: 297 agtaccaatattactgatagttccctttaagtctttaattaattgttttgtgaaagttaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agtaccaatattactgatagttccctttaagtctttaattaattgttttgtgaaagttaa 509
Query: 357 tgtaaaattcaggattgtccca-tgaagtattgaaatgtcaagattgacattcacaataa 415
| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 508 tataaaattcaggattgt-ccattgaagtattgaaatgtcaagattgacattcacaataa 450
Query: 416 actattttcttcagattacattttacttttaaaatgaaaactcaagagccattctgacct 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actattttcttcagattacattttacttttaaaatgaaaactcaagagccattctgacct 390
Query: 476 ggatttgaagtaaattagaaactctatgaatcagggatgtaatttgttaaaaatatttag 535
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 389 ggatttgaagtaaattagaaactctatgaatcagggatgtaacttgttaaaaatattcag 330
Query: 536 tacttgttatctatatcaaatctacttactcattgagatgtattttagttttgaatccaa 595
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 329 tacttgttatctatatcaaatctacttattcattgagatatattttagttttgaatccaa 270
Query: 596 aaaaatattagtttctttaaaaaaaatctttcatagaattataacttgaggattgaagaa 655
||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 269 aaaaa-attagtatctttaaaaaaa-tctttcatagaattatcacttgaggattgaagaa 212
Query: 656 aatgcccaaga 666
||| |||||||
Sbjct: 211 aatacccaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
