Query= MSMg01no491_f23.b1 MSMg01no491_f23.b1 CHROMAT_FILE:
MSMg01no491_f23.b1 PHD_FILE: MSMg01no491_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:16 2005
(612 letters)
>mm_chr10_12090472_12091483
Length = 1012
Score = 482 bits (249), Expect = e-140
Identities = 282/297 (94%), Gaps = 9/297 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtcacactttc----ttccatgcaaaagatagagaaaaaggcaggcgtggtgg 60
||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct: 206 gaattcagtcaca----caaaattccatgcaaaagatagagaaaaaggcaggtgtggtgg 261
Query: 61 tggcacctgtaatcccagcactctggagacttgaggtgggaagattaattcaaatagggg 120
|||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct: 262 tggcacctgt-atcccagcactctgcagacttgaggtgggaagattgtttcaaatcgggg 320
Query: 121 actggcttggaccacacagtgagttcaaggctagcagaaatacagagcaaatgtctgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggcttggaccacacagtgagttcaaggctagcagaaatacagagcaaatgtctgtct 380
Query: 181 ccaaaagggagagatggaaacatgtcaagagtaaccactaagaatccagaggaacatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ccaaaagggagagatggaaacatgtcaagagtaaccactaagaatccagaggaccatgga 440
Query: 241 taagttggagatgctgaaaactctcttcttggcactctcccaagaatcccataaagt 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagttggagatgctgaaaactctcttcttggcactctcccaagaatcccataaagt 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f23.g1 MSMg01no491_f23.g1 CHROMAT_FILE:
MSMg01no491_f23.g1 PHD_FILE: MSMg01no491_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:16 2005
(568 letters)
>mm_chr10_12223889_12224857
Length = 969
Score = 975 bits (504), Expect = 0.0
Identities = 552/570 (96%), Gaps = 9/570 (1%)
Strand = Plus / Minus
Query: 4 gctgggtgattcc-ccccctcccccaacacatacctttggcaggttgtagattaatgtgc 62
||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 769 gctgggtga-tcctccccc-cccccaacacacacctttggcaggttgtagattaatgtgc 712
Query: 63 taaggaatgcaaattaactatggaagactctctactactctgatttcgtttttattatct 122
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 711 taagaaatgcaaattaactatggaagactctctactactctgatttcatttttattatct 652
Query: 123 agacgacccaacaatattgttaagaagactatgtaaatttgtagtcacttccttaaccca 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 651 agacgacccaacaatattgttaagaagactatgtaaatttgtagtcacttcc-taaccca 593
Query: 183 tt----tgcctggctcttcatcagtttgcctgtcatttggtatcagatgtacaaaggtgc 238
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 592 tttgcctgcctggctcttcatcagtttgcctgtcatttggtatcaggtgtacaaaggtgc 533
Query: 239 gcacatagacttctgccttcacttctacctgtgtcttgagccttagccattgccttgtat 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 532 gcacatagacttctgccttcacttctacctgtgtcttgagccttagctattgccttgtat 473
Query: 299 aggtgccaaaggcatgtggttctctcctgatctacacactggaatcttcccccccaaggc 358
||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 aggggccaaaggcgtgtggttctctcctgatctacacactggaatctt-ccccccaaggc 414
Query: 359 tggcgcatggtttttctctgggggaagaaactttctctctttgcaagactcagatgaagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tggcgcatggtttttctctgggggaagaaactttctctctttgcaagactcagatgaagc 354
Query: 419 cccctccccaggccccaccccacatcatgaggaagcactttggagccaagctcagtgctc 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cccctccccagcccccaccccacatcatgaggaagcactttggagccaagctcagtgctc 294
Query: 479 aacttcctgtagtataagatccagaagtcctgagaatttatgatgtatctgagaaaggta 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 293 aacttcctgtagtataagatccagaagtcctgagaatttatggtgtatctgagaaaggta 234
Query: 539 gaaattaaataaaacataaaaaaaggaata 568
||||||||||||||||||||||||||||||
Sbjct: 233 gaaattaaataaaacataaaaaaaggaata 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
