Query= MSMg01no491_j24.b1 MSMg01no491_j24.b1 CHROMAT_FILE:
MSMg01no491_j24.b1 PHD_FILE: MSMg01no491_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
(701 letters)
>mm_chr10_116058057_116059157
Length = 1101
Score = 698 bits (361), Expect = 0.0
Identities = 393/413 (95%), Gaps = 16/413 (3%)
Strand = Plus / Minus
Query: 5 gaattcagggctttttgacttcatggttctacctatgtcccacagcgtacatatactaac 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gaattcagggctttctgacttcatggttctacctatgtcccacagcgtacatatactaac 343
Query: 65 tataattttcctgtaattaaaaacattcttattcgaatgaccactccatctgatacaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tataattttcctgtaattaaaaacattcttattcgaatgaccactccatctgatacaagt 283
Query: 125 tatataattttaagaactgaaaattttaatgtctcaaatatttaaaaatattacattcca 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tatataattttaaaaactgaaaattttaatgtctcaaatatttaaaaatattacattcca 223
Query: 185 tctattttacttatttta-----atatttttacttattcactttacatcccactcactgc 239
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 tctattttgcttattttattttaatatttttacttattcactttacatcccactcactgc 163
Query: 240 cccattccctgttagtccctcccacaatccttcccccattccactctccccttctcctct 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 162 cccattccctgttagtccctcccacaatcctttccccattccactctccccttctcctct 103
Query: 300 ggacaggtaggggtcccctggttatttcccccactctggcacatcaagtcgctctgaggc 359
|| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gg-----------tcccctggttatttcccccactctggcacatcaagtcgctctgaggc 54
Query: 360 taggcacatcctctcccactgaggccagacaaggcagcccagctagaaaaaca 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 taggcacatcctctcccactgaggccagacaaggcagcccagctagaaaaaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_j24.g1 MSMg01no491_j24.g1 CHROMAT_FILE:
MSMg01no491_j24.g1 PHD_FILE: MSMg01no491_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:35 2005
(672 letters)
>mm_chr10_116004765_116005834
Length = 1070
Score = 1237 bits (640), Expect = 0.0
Identities = 664/672 (98%), Gaps = 2/672 (0%)
Strand = Plus / Plus
Query: 1 actaactttgtagacaactaactagaaagaggagatgtaagattattttactcatagaga 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 actaactttgtagacaactaactataaagaggagatgtaagattattttactcatagaga 260
Query: 61 agccaaggtctttacagaggcttacaggtctttcacctgctagtccccagttttcccagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccaaggtctttacagaggcttacaggtctttcacctgctagtccccagttttcccagt 320
Query: 121 actatctaatcggtctcttcctctcttactacacttcaataagtcttgtgattctttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actatctaatcggtctcttcctctcttactacacttcaataagtcttgtgattctttttt 380
Query: 181 ttttttaatcgtaagacatctagactactcctgtggtacggttatctgttcttcgttgct 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttt-aatcgtaagacatctagactactcctgtggtacggttatctgttcttcgttgct 439
Query: 241 gtcccttcctttataggtctttcacttggataaatacaaaaccactccttcaccacaggc 300
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcccttcctaaa-aggtctttcacttggataaatacaaaaccactccttcaccacaggc 498
Query: 301 ttccccattcaccctctgagaggaaaactggcctgttagccatacatcctccatagacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttccccattcaccctctgagaggaaaactggcctgttagccatacatcctccatagacct 558
Query: 361 ttgatttcttttgcttcataacttgaccaccaaccaccacagtctatgctgtgcaccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgatttcttttgcttcataacttgaccaccaaccaccacagtctatgctgtgcaccctt 618
Query: 421 atattctattagaacagtatctgacaaagaaaaggagttaaaataatatttatcaaatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atattctattagaacagtatctgacaaagaaaaggagttaaaataatatttatcaaatga 678
Query: 481 attaataaactagtaacacagagttaagtcacttggccttgacctaaccctacaaagcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attaataaactagtaacacagagttaagtcacttggccttgacctaaccctacaaagcaa 738
Query: 541 gtcactcattccaaatacaagcaggtatcaaactggctttaaagccctccaaaaacccta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtcactcattccaaatacaagcaggtatcaaactggctttaaagccctccaaaaacccta 798
Query: 601 agcttaataataaaagctggattctgattttagcatctactgtcctcactatattttgca 660
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 799 agcttaataataaaaactggattctgattttagcatctactgtcttcactatattttgca 858
Query: 661 ttaatagctgat 672
||||||| ||||
Sbjct: 859 ttaatagttgat 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1070
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1060
Effective search space: 701720
Effective search space used: 701720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
