BAC Information

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BAC

Clone NameMSMg01-493K06
Chromosome10 (Build37)
Map Location 17,825,417 - 17,826,021
singlet/doubletsinglet
Overlap geneReps1
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik
Downstream geneLOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493K06.T7 (MSMg01no493_k06.b1)MSMg01-493K06.TJ (MSMg01no493_k06.g1)
ACCAG571110AG571111
length754721
length of high quality
(start - end)		670 (79 - 748)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no493_k06.b1 PHD_FILE: MSMg01no493_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:15 2005CHROMAT_FILE: MSMg01no493_k06.g1 PHD_FILE: MSMg01no493_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATAACGCGGAA
TTCTCTACCTCATTTCANAAAAATTCCACGCAGAACTCAGCACCCTGGAA
GGCAGTGGGTCTCATCGCCAGGACAAGCACAGCGTTAAGAGCTATGGGCT
CCGGCACCTGACTACTGGCATACTGGCTGGGCTGCATGGACTTGGCTGAG
TTACACATCCTCTCTGTGCTCCCGTTTCACCATCTTTAACATGAAATTAG
TAATACCGACCTCACAGGAGTGCTGTGAGGGACTAAGTAAATCAGGTGAA
AAGTCTTTTGAAGAGACTGGCATATCAAAAGTGCTTTAAAAAGTTAGGGA
TTTTAGTGTTTTCTCTCATAGCACCTCATCTATATCCATCAGTACTAAAT
AAACACTGAAATAATACTGGGTTTGTGGGAGATAAAATATAACCTAAATT
TATATTCCAAGTAGATATTTTAATAGCTACTACCAAAGCATCTTAAAATC
ATTGTTTTACTAGCTTTTAAGCATAGCATAAATTCCATATCAAAATATGC
ATAGCAAAATTATGTCATTTATGATTTTATTACTAGGTATTGTAAAAAAA
AAAAAACCCTGATAGAACTTTTTGAGAGGGATAATGCATGCACCTAAAAT
CAGAACTGAAAAGTATATTTACTCCATCTCTCCAGATCACGCCTGGATAT
GGACTCCTTATACTTTGGGAAGAATTGCTTTTATGTATAATCCGTAAAGG
GCTG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATGTGTAATTTAAGCTTTAGTAATGTTTC
TCTTACAAATGTGTGTTCCCTTGCATTTGAGGCATAGATGTTCAGAACTG
AGATGTCATTTTGGTGGATTTTTTTTTCTTTGATGAGTATGAACTGTCCT
TCCCCATCTCTTTTGATTACTTTTGGTTGAAAGTCTATTATTTTAACTAT
TAGAATAGCTACTCCAGCTTGCTTCTTGGGTCTATTTGCTTGGAAAACCT
TTTGCCAGCCCNTTTACTCCTGAGTATAGTTTCTATCCTTTGGTTGCTTG
AAGGTGCATTTCCTTGGATGCCAAAAAAATGGGGGGATCTTTAATTAAGG
AATCCCGCCGGGGTAACCCGGGGGCCTTTTTTTTTGGGGGGAAATTTGGA
TTCTTTTTGGGTTTTGGGGAAGGTTTTTTATGGGGCCCCCCGGGGGGGGG
GTAAATCCCCCCATTTTTTCCCCCCCATAAAAAGGGGCCCTAATTTTTTT
TTTTAAAAAAAGTGTTTTTTTTAGGGGGGCCCCCCCTCTTTTTTTTTTGT
TGGGGGGGGGGTGTGTTTAAAAAAAAAAAAAATCGGGGGGGGGTTTTTTT
NTTTCTTATAAAAAAAAAAAAAAAATTGGGGCGGCCCCCCCTGCCGGTGT
TTTTATTACCCTCCCAATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_k06.b1 MSMg01no493_k06.b1 CHROMAT_FILE:
MSMg01no493_k06.b1 PHD_FILE: MSMg01no493_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
         (670 letters)



>mm_chr10_17824948_17826021
          Length = 1074

 Score = 1127 bits (583), Expect = 0.0
 Identities = 598/605 (98%), Gaps = 4/605 (0%)
 Strand = Plus / Minus

                                                                        
Query: 70   gctccggcacctgactactggcatactggctgggctgcatggacttggctgagttacaca 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 gctccggcacctgactactggcatactggctgggctgcatggacttggctgagttacaca 1015

                                                                        
Query: 130  tcctctctgtgctcccgtttcaccatctttaacatgaaattagtaataccgacctcacag 189
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tcctctctgtgctcctgtttcaccatctttaacatgaaattagtaataccgacctcacag 955

                                                                        
Query: 190  gagtgctgtgagggactaagtaaatcaggtgaaaagtcttttgaagagactggcatatca 249
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  gactgctgtgagggactaagtaaatcaggtgaaaagtcttttgaagagactggcatatca 895

                                                                        
Query: 250  aaagtgctttaaaaagttagggattttagtgttttctctcatagcacctcatctatatcc 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  aaagtgctttaaaaagttagggattttagtgttttctctcatagcacctcatctatatcc 835

                                                                        
Query: 310  atcagtactaaataaacactgaaataatactgggtttgtgggagataaaatataacctaa 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  atcagtactaaataaacactgaaataatactgggtttgtgggagataaaatataacctaa 775

                                                                        
Query: 370  atttatattccaagtagatattttaatagctactaccaaagcatcttaaaatcattgttt 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  atttatattccaagtagatattttaatagctactaccaaagcatcttaaaatcattgttt 715

                                                                        
Query: 430  tactagcttttaagcatagcataaattccatatcaaaatatgcatagcaaaattatgtca 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  tactagcttttaagcatagcataaattccatatcaaaatatgcatagcaaaattatgtca 655

                                                                        
Query: 490  tttatgattttattactaggtattgtaaaaaaaaaaaaa----ccctgatagaacttttt 545
            |||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||
Sbjct: 654  tttatgattttattactaggcattgtaaaaaaaaaaaaaaaaaccctgatagaacttttt 595

                                                                        
Query: 546  gagagggataatgcatgcacctaaaatcagaactgaaaagtatatttactccatctctcc 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  gagagggataatgcatgcacctaaaatcagaactgaaaagtatatttactccatctctcc 535

                                                                        
Query: 606  agatcacgcctggatatggactccttatactttgggaagaattgcttttatgtataatcc 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  agatcacgcctggatatggactccttatactttgggaagaattgcttttatgtataatcc 475

                 
Query: 666  gtaaa 670
            |||||
Sbjct: 474  gtaaa 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1074
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1064
Effective search space:   702240
Effective search space used:   702240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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