Query= MSMg01no493_o19.b1 MSMg01no493_o19.b1 CHROMAT_FILE:
MSMg01no493_o19.b1 PHD_FILE: MSMg01no493_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:38 2005
(571 letters)
>mm_chr10_114132641_114133611
Length = 971
Score = 1046 bits (541), Expect = 0.0
Identities = 560/569 (98%), Gaps = 6/569 (1%)
Strand = Plus / Plus
Query: 6 aattctcaaataat---ttctctcataattcccatgagcacttactggcaagacttcagg 62
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcaaataacgccttc---cataattcccatgagcacttactggcaagacttcagg 262
Query: 63 tcattaatcttattttacctcttcaggagaaattatttttgtacccctcatctctaaaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcattaatcttattttacctcttcaggagaaattatttttgtacccctcatctctaaaaa 322
Query: 123 tataaatctttgaatttttatgccactagatgcctcagctagtgataaagaagaaatccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tataaatctttgaatttttatgccactagatgcctcagctagtgataaagaagaaatccc 382
Query: 183 acctttcagaaatccttccaataaaataaccaagaagttcttacctagttttggcaaaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctttcagaaatccttccaataaaataaccaagaagttcttacctagttttggcaaaga 442
Query: 243 atagggcactttaaagtagtcttcataaaattctattaatctctttgtaatgtggagagc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atagggcactttaaagtagtcttcataaaattctattaatctctttgtaatgtggagagc 502
Query: 303 atagtccccggatcctcttctgatagcatcgggtctcgcatataatcggacctaattaaa 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 503 atagtccccggatcctcttctgatagcgtcgggtctcgcatataatcggacctaattaaa 562
Query: 363 aatatatataaaagttaacttcagcctttcggtacttgagttttattttctgtgaacata 422
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 563 aatatatataaaagttaacttcagcctttcggtacttgagtgttattttctgtgaacata 622
Query: 423 tgaatctgtacaaatcactttggatggtataaaaattaaacagtgttcttgtttatatat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgaatctgtacaaatcactttggatggtataaaaattaaacagtgttcttgtttatatat 682
Query: 483 caaaacacattgcggcaaaagagccaaattgaaacaattgatgtggctgagtcgagcaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaaacacattgcggcaaaagagccaaattgaaacaattgatgtggctgagtcgagcaag 742
Query: 543 tcacaatttagtcactttccagggtgaca 571
|||||||||||||||||||||||||||||
Sbjct: 743 tcacaatttagtcactttccagggtgaca 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space: 539121
Effective search space used: 539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o19.g1 MSMg01no493_o19.g1 CHROMAT_FILE:
MSMg01no493_o19.g1 PHD_FILE: MSMg01no493_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:38 2005
(561 letters)
>mm_chr10_114259174_114260134
Length = 961
Score = 1025 bits (530), Expect = 0.0
Identities = 554/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 1 caggaaagaaaacctgtgcatatatccaggaggacctaccctcccagaggagaaggggag 60
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 916 caggaaagaaaacctgtgcatatacccaggaggacctaccctcctagaggagaaggggag 857
Query: 61 ggtgttgattggggagaacagaagagggggtggcatttgggatgtaaacaaac-aaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 856 ggtgttgattggggagaacagaagagggggtggcatttgggatgtaaacaaacaaaaaaa 797
Query: 120 ataataaattaataataaaataaatagaaattatagaaatatgctcaccataccatatat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ataataaattaataataaaataaatagaaattatagaaatatgctcaccataccatatat 737
Query: 180 actgctgtgaaaatatctttatatgacatagaggcatgtatggtaagtatgtgcaatgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 actgctgtgaaaatatctttatatgacatagaggcatgtatggtaagtatgtgcaatgaa 677
Query: 240 cctttaaaggaaatgaacaataaattgatcaaattcgaaaagaaagaaaagttccactgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cctttaaaggaaatgaacaataaattgatcaaattcgaaaagaaagaaaagttccactgt 617
Query: 300 caagaaaagagagaagagccatgggcgcacagttatctgaagagatactccacaaagaat 359
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 616 caagaaaagagagaagagccacgggcgcacagttatctgaagagataagccacaaagaat 557
Query: 360 gtgagttcatcctttcagctactcagtgcaaacatcctggtcttaatccagagacttctt 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtgagttcatccttttagctactcagtgcaaacatcctggtcttaatccagagacttctt 497
Query: 420 tcacctacccatgtttaatccttcggccaaatgagatcagttctcagcacccccacctcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcacctacccatgtttaatccttcggccaaatgagatcagttctcagcacccccacctcc 437
Query: 480 ctgggataccatttcccttcaaaaatatcttgtatgaattattttaattaatctccaaac 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctgggatactatttcccttcaaaaatatcttgtatgaattattttaattaatctccaaac 377
Query: 540 tcttctttcccttttcgattgc 561
||||||||||||||||||||||
Sbjct: 376 tcttctttcccttttcgattgc 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
