BAC Information

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BAC

Clone NameMSMg01-494M10
Chromosome10 (Build37)
Map Location 59,342,622 - 59,342,997
singlet/doubletsinglet
Overlap geneDnajb12
Upstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936
Downstream geneDdit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494M10.T7 (MSMg01no494_m10.b1)MSMg01-494M10.TJ (MSMg01no494_m10.g1)
ACCAG571976AG571977
length912729
length of high quality
(start - end)
---376 (65 - 440)
definitionCHROMAT_FILE: MSMg01no494_m10.b1 PHD_FILE: MSMg01no494_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005CHROMAT_FILE: MSMg01no494_m10.g1 PHD_FILE: MSMg01no494_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGTCGCTATAACGATTTACTTTATCAGAAAGGATTTGCTGGAATATCTG
CTTTGCTCAATAGTCTGTACGCATATTGTATAATAGTATATAAACCACAC
ATGTTGATTCCGTCCCTGGGTACAAATTGTGATCTAAAACTCAGAATGAT
CTCGCGTAAAAGGTAACCTCGACCCATGTAAACTGCGGTTTAGGGTTCAT
ACATCTGACAATATATGTAATGAAAGTACTACTCAATTTCCAATTTCGTT
GACCATTTGTCTTTATTAAGAGACAATCAGTATATACGACGTTTTTGTGT
ATTAAGACGTTGTACCATCAACTTTCCTCTTGGAATTGTTCTATAATCAT
AATATTCTATAATATAATATACTGGTGTGTGTCAATTCTCCGCATCTAAC
ATATTGGATGGTCGTGTAATTCTCATCATTCCTCACGTTTATTCAGTAGT
TAATACCCAGGCATATGGGCCTTGGCTATGTCTTCATAAATGTAAATATT
ATATTCACGCCTTTGACTATATACCACCATTGATGCGTATACTTCGCTAT
AATCTTCTTTCTATTGTATTATGCCGCATGGTCGTGTGTTGCATTATAAA
CCTCTACACTCTCTTCGATTCACTTGCCTTATACTGGTTCTTATTTTGTC
AACCCTCTCTCTTATTTTTCTCTCTACAACCTTAATTCTTCTCTGGGTGC
TTTTGTCGGCAGTCGCGCTCTCTCTTTCTTTTTTTGTTCCCTATTCCCTT
TGCCATAACATATTATTTTACCTTTTCCCTTTTATTTTTTGCTCATTGGT
CCTCTCCATTTGTTTTCCTCTAAGTACCACAACGGTTTGTACACTTTTAA
TTCTTTCTTTTCTCATAAACTACCTTCTCCTACCTTTCCCTTATATTCTC
TTTCTTTGTTTT
GGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTCCCTCTCTAGAACCCATTCTCCCTTAGAATAGT
TATGTTTATTTTCCTGAACTATAATATTTCCCAGGCCGGCCAGTGGCCCT
GAGCCACCGAACAGCCCTCTGGGAGAAGTAGTTCGCTTTCGCGTCCACAA
GAGTCCTCTTCACCGGGTCTCCCAGCGCGTCTCCTTCCCAGAAACCTCAC
ATTCCAGAGGCCTCCACTAGCACTGGGAAGGGGTTGGGAGCCGGGCCCTC
GGGGGTCTCCAGGGGGCCAGCATCCTAGAGACCGCGGCACCGCTGGACTA
CGAATCCCAGCAGCACCCGCGCGCGCCAGTGCGCAGGCGTAGCCGCGCCT
CGCCACCCCTCCCCCCTCCGCCTACTGCTCCCGTCGGTCCGTTCCCGTGG
TCCCCCGATCCGTGCTAATGCCCCCTTCGGTCCCTGCGGCGCCTCCCACT
CACCGCTGACTCGTGGCGTCGGGTAGAGCCGCTGCGCCTTCTCCAGGAAG
CGCAGTGCCCGCTCGGGCTGGTTGCTTTGGATGTGTTTGAGGGCGATGCT
GATACAGCGTTCGGCTTCATCCTTGGTGGATTCCATGGCGGAACCCGATC
TCGGAATCATTGAGGGGGATGTCGGGCTAGCGAATTGCTGCGTTAGCCTG
CTGCGTGTCTTGAGTTACGTCTGTGTCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_m10.g1 MSMg01no494_m10.g1 CHROMAT_FILE:
MSMg01no494_m10.g1 PHD_FILE: MSMg01no494_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:42 2005
         (376 letters)



>mm_chr10_59342422_59343197
          Length = 776

 Score =  712 bits (368), Expect = 0.0
 Identities = 374/376 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccctctctagaacccattctcccttagaatagttatgtttattttcctgaactataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 cttccctctctagaacccattctcccttagaatagttatgtttattttcctgaactataa 517

                                                                       
Query: 61  tatttcccaggccggccagtggccctgagccaccgaacagccctctgggagaagtagttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tatttcccaggccggccagtggccctgagccaccgaacagccctctgggagaagtagttc 457

                                                                       
Query: 121 gctttcgcgtccacaagagtcctcttcaccgggtctcccagcgcgtctccttcccagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gctttcgcgtccacaagagtcctcttcaccgggtctcccagcgcgtctccttcccagaaa 397

                                                                       
Query: 181 cctcacattccagaggcctccactagcactgggaaggggttgggagccgggccctcgggg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 cctcacattccagaggcctccacaagcactgggaaggggttgggagccgggccctcgggg 337

                                                                       
Query: 241 gtctccagggggccagcatcctagagaccgcggcaccgctggactacgaatcccagcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtctccagggggccagcatcctagagaccgcggcaccgctggactacgaatcccagcagc 277

                                                                       
Query: 301 acccgcgcgcgccagtgcgcaggcgtagccgcgcctcgccacccctcccccctccgccta 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 276 acccgcgcgcgccagtgcgcaggcgtagccgcgcctcgccacccctcccccctccgccaa 217

                           
Query: 361 ctgctcccgtcggtcc 376
           ||||||||||||||||
Sbjct: 216 ctgctcccgtcggtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)