BAC Information

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BAC

Clone NameMSMg01-495A20
Chromosome10 (Build37)
Map Location 42,578,692 - 42,579,325
singlet/doubletsinglet
Overlap genenone
Upstream geneSesn1, Armc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63
Downstream geneScml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495A20.T7 (MSMg01no495_a20.b1)MSMg01-495A20.TJ (MSMg01no495_a20.g1)
ACCAG572187AG572188
length784759
length of high quality
(start - end)
533 (48 - 580)634 (75 - 708)
definitionCHROMAT_FILE: MSMg01no495_a20.b1 PHD_FILE: MSMg01no495_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:02 2005CHROMAT_FILE: MSMg01no495_a20.g1 PHD_FILE: MSMg01no495_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTGAGTAGGTTATCTATTCAGTAACATTCAAATTTACTTCTA
GTAGAGATGGTGAAACTAATTAGGCATTACAAAGAACAGAGCTGGAATAG
CTCAGGGCTGGTCTGCAGAGTGATTACTTAGGACAGTAGCCAGTCTCACC
CAAACAAGGGAATACACAATGGCCTAGCTAATAGGTGGGTTTACCATGAA
AGAGTTAGGGAATCCCCCTGAATCTTCACTACAGCCAGGTATAGCAGGCT
ACATTGCATATTAGAAGCAAGTTGGTGAATTCTTCTGACAAATGGAGATT
CCCCACAGATACTTTAAAGAACAGCCAACTTACACTCATGCAAGAATTTA
TCAAGGCCTAGGAAATAGGGGGTTTGTGGTATTGCATTATTCATGAGAAG
GTCGGCTAGAGCAGAACCCCCTAGTGCTAGCTTTCACAAGGCTCAAAGGA
GTAGCACAAATTGTGACTAGGGTGTGAAATCCTTACCTGTCATTAGCTGA
CCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGNTCCTGT
AAGTCCTTTTGAAGTCATTCCTCTGTTTTGTGTCAGATAACTTCCATGTA
TTTTGCCTGCCGNGACATTCTACCCCCTTTGTTTTCTGGATTATATAAGA
CTGGGGGNTCACTTCGTGAAATACACTCAGATCTACACACTCTCTTGGGC
TCCTCCTGGTTGCAATCCCGACTCTTCCCCCCCT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTGGGTGGCATGTGTCCTTTCTGCC
TAGGTCCGCTGCCTGCCACAGCCCTGACTCCTCTGCCCCAAGGTGGTTCC
CAGGCTGGCCGGGGCCTGGCCCAGCTTGGATGGCAGTCTCCATTCCTACC
AAGTGCCATAAAGAGTCAAAAATTTGTACCAACAGTGTAGTATGTGTCCC
CTTTGACATCCAAGGGAATCAAAGGCTGATTAGCGAAACAAGATTGGCCC
ATAGAAGCTCTCAATAAATTTCTATTTTATGAAAGATACAGACAGTTTGG
CCCAAGTAGAAATTATTAGGGTTATGGGACTGGTTTTAGACTGAAATTCA
TGGTGTAGGCATAGAAAAGTAACACGTTCACAACAAAGTGCAGACTCACA
CTGTTAAGGAAAGTAGATGGGAAGAGACATAGAGCTCTCTCCTCCTGGGA
AGAGGCCTTAGGGGAGGCGGTGAGCCGCTGAAGACAGCATCATGGTTCGC
CACTGACCTACAGCAACCCTTTTGGACTCGTATTTAAACTATTGAGGGTT
TTTTCCTTTGGAAATAAATATGTTATAAAACTGAAGGGGAAAAGTAAAAA
TGAAGACAAGGAAAAGAAGGAATCTACCCCCTTTATTTACCTGTTGACTT
TTGATGTTCATTCAGGAAAATACAGTCTTGGAAGTTTTGTTTTGGAAGGG
GTGTGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_a20.g1 MSMg01no495_a20.g1 CHROMAT_FILE:
MSMg01no495_a20.g1 PHD_FILE: MSMg01no495_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:02 2005
         (634 letters)



>mm_chr10_42578492_42579525
          Length = 1034

 Score = 1094 bits (566), Expect = 0.0
 Identities = 617/634 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgggtggcatgtgtcctttctgcctaggtccgctgcctgccacagccctgactcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 cctgggtggcatgtgtcctttctgcctaggtccgctgcctgccacagccctgactcctct 775

                                                                       
Query: 61  gccccaaggtggttcccaggctggccggggcctggcccagcttggatggcagtctccatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gccccaaggtggttcccaggctggccggggcctggcccagcttggatggcagtctccatt 715

                                                                       
Query: 121 cctaccaagtgccataaagagtcaaaaatttgtaccaacagtgtagtatgtgtccccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 cctaccaagtgccataaagagtcaaaaatttgtaccaacagtgtagtatgtgtccccttt 655

                                                                       
Query: 181 gacatccaagggaatcaaaggctgattagcgaaacaagattggcccatagaagctctcaa 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 654 gacatccaagggaatcaaaggctgattagtgaaacaagattggcccatagaagctctcaa 595

                                                                       
Query: 241 taaatttctattttatgaaagatacagacagtttggcccaagtagaaattattagggtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taaatttctattttatgaaagatacagacagtttggcccaagtagaaattattagggtta 535

                                                                       
Query: 301 tgggactggttttagactgaaattcatggtgtaggcatagaaaagtaacacgttcacaac 360
           ||||||||| ||| |||||||||||||| |||||  || |||||||||||||||||||||
Sbjct: 534 tgggactggctttggactgaaattcatgatgtagaaatggaaaagtaacacgttcacaac 475

                                                                       
Query: 361 aaagtgcagactcacactgttaaggaaagtagatgggaagagacatagagctctctcctc 420
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 474 aaagtgcagactcacgctgttaaggaacgtagatgggaagagacatagagctctctcctc 415

                                                                       
Query: 421 ctgggaagaggccttaggggaggcggtgagccgctgaagacagcatcatggttcgccact 480
            |||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct: 414 atgggaagaggccttaggggaggcggtgagctgccgaagacagcatcatggctcgccact 355

                                                                       
Query: 481 gacctacagcaacccttttggactcgtatttaaactattgagggttttttcctttggaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gacctacagcaacccttttggactcgtatttaaactattgagggttttttcctttggaaa 295

                                                                       
Query: 541 taaatatgttataaaactgaaggggaaaagtaaaaatgaagacaaggaaaagaaggaatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 taaatatgttataaaactgaaggggaaaagtaaaaatgaagacaaggaaaagaaggaatc 235

                                             
Query: 601 taccccctttatttacctgttgacttttgatgtt 634
            ||  |||||||||||||||||| ||||||||||
Sbjct: 234 cacatcctttatttacctgttgagttttgatgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)