BAC Information

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BAC

Clone NameMSMg01-495C06
Chromosome10 (Build37)
Map Location 14,149,211 - 14,149,807
singlet/doubletsinglet
Overlap geneGpr126
Upstream geneFuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneLOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495C06.T7 (MSMg01no495_c06.b1)MSMg01-495C06.TJ (MSMg01no495_c06.g1)
ACCAG572255AG572256
length734732
length of high quality
(start - end)
553 (77 - 629)594 (83 - 676)
definitionCHROMAT_FILE: MSMg01no495_c06.b1 PHD_FILE: MSMg01no495_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:09 2005CHROMAT_FILE: MSMg01no495_c06.g1 PHD_FILE: MSMg01no495_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAT
CCGCGGAATTCTTTGGTTCATTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTCTTATTGATGGTGTCTTTTGCTTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTTTTTTGTACCCATTTCTTCGAGGCTTTTC
CCTAATTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTC
CTTAATTCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAA
TTCGCATTTTTCTACATGATAACCACCAGTTGTGCCAGCACCATTTGTTG
AAAATGCTGTCATTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCC
ATTGGTCTACTTGTCTGTCACTATACCAATACCATGCAATTTTTATCACA
ATTGCTCTGTAGTACAGCTTTAGGTTATGCATGGTGATTCCACCAGAGGT
TCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTA
CCCCCCTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGCTTTTGCTTTTGG
CCTCTGTTATAAGATTATAAACCAGTGGAAGAAACACTTTCCAAAATTCA
TCCTTTTTGGTAATGTGCCTACAGCCTTTTGGCTCTTCCAGACCAACAAC
ACTTGAGTCATAGTTTTTTTATTCTGGATTTACAAACTCTTGTTCACTTG
TATAAGATAGTCTCCGAGTCTAAATATTCCCATGATCCCATCATTGTGTC
CTTTGATCTGTCGATGTGAAAAATTTTTAATGTCCTTTTCTACATGTCTC
TGTTATAGAAATGACTTGCCTATTGTTTGACATTCTTATATCTTCATGTT
GGCTGTTCTAGAAGGATAAAATTGTCATGTGGTCATTCTCAGAAAGCACA
ACATGATGTGAGAATTGTCTTTGAACTGCTGTCCTTATGCAGAAGTACTG
ATTTTTTTTAATTATTTATTTGGTCTTATTTGCTTCACCTAGATGGAAGT
AGTTGATCATCCTTCAAAACTTACAATTTCTCTACTCTAGCTGGTCCTGT
GGAAACTGTACCAGATAGACACCCCTCTGAAGTCAAATGGCACTGACACA
AACTCCATCGCATGTGTCATGGGCCCGTGTCTTCCCTGTGTTTTGAGAAA
CTCATAGGCTGTTGAGGAAGGGGAAGACTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_c06.g1 MSMg01no495_c06.g1 CHROMAT_FILE:
MSMg01no495_c06.g1 PHD_FILE: MSMg01no495_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:09 2005
         (594 letters)



>mm_chr10_14149190_14150183
          Length = 994

 Score = 1062 bits (549), Expect = 0.0
 Identities = 584/597 (97%), Gaps = 3/597 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcgcttttgcttttggcctctgttataagattataaaccagtggaagaaacactttcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 618 cttcgcttttgcttttggcctctgttataagattataaaccactggaagaaacactttcc 559

                                                                       
Query: 61  aaaattcatcctttttggtaatgtgcctacagccttttggctcttccagaccaacaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaaattcatcctttttggtaatgtgcctacagccttttggctcttccagaccaacaacac 499

                                                                       
Query: 121 ttgagtcatagtttttttattctggatttacaaactcttgttcacttgtataagatagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgagtcatagtttttttattctggatttacaaactcttgttcacttgtataagatagtc 439

                                                                       
Query: 181 tccgagtctaaatattcccatgatcccatcattgtgtcctttgatctgtcgatgtgaaaa 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcggagtctaaatattcccatgatcccatcattgtgtcctttgatctgtcgatgtgaaaa 379

                                                                       
Query: 241 atttttaatgtccttttctacatgtctctgttatagaaatgacttgcctattgtttgaca 300
           ||   ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atgcctaacgtccttttctacgtgtctctgttatagaaatgacttgcctattgtttgaca 319

                                                                       
Query: 301 ttcttatatcttcatgttggctgttctagaaggataaaattgtcatgtggtcattctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcttatatcttcatgttggctgttctagaaggataaaattgtcatgtggtcattctcag 259

                                                                       
Query: 361 aaagcacaacatgatgtgagaattgtctttgaactgctgtccttatgcagaagtactgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aaagcacaacatgatgtgagaattgtctttgaactgctgtccttatgcagaagtactgat 199

                                                                       
Query: 421 ttttttt---aattatttatttggtcttatttgcttcacctagatggaagtagttgatca 477
           |||||||   ||||||||||||||||| |||||| |||||||||||||| ||||||||||
Sbjct: 198 tttttttttaaattatttatttggtctcatttgcctcacctagatggaaatagttgatca 139

                                                                       
Query: 478 tccttcaaaacttacaatttctctactctagctggtcctgtggaaactgtaccagataga 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tccttcaaaacttacaatttctctactctagctggtcctgtggaaactgtaccagataga 79

                                                                    
Query: 538 cacccctctgaagtcaaatggcactgacacaaactccatcgcatgtgtcatgggccc 594
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cacccctctgaagtcaaatggcactgacacaaactccatcgcatgtgtcatgggccc 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)