BAC Information

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BAC

Clone NameMSMg01-495I15
Chromosome10 (Build37)
Map Location 69,707,212 - 69,707,767
singlet/doubletsinglet
Overlap genenone
Upstream geneRhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik
Downstream geneSlc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I15.T7 (MSMg01no495_i15.b1)MSMg01-495I15.TJ (MSMg01no495_i15.g1)
ACCAG572559AG572560
length705746
length of high quality
(start - end)
556 (83 - 638)---
definitionCHROMAT_FILE: MSMg01no495_i15.b1 PHD_FILE: MSMg01no495_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:38 2005CHROMAT_FILE: MSMg01no495_i15.g1 PHD_FILE: MSMg01no495_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGTGTTTTTNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCG
AAAACCGCGGAATTCACAGATGTACGATAATGGGGCAGAGGGTGAGCACA
CGCCACATTGCAGACATATCCCTGGAGCGAACGGTGTCCACACATTCGTT
AGCCCCTGGAACCCTAAAGTTTTCTGCAGTGGGCTTCGGTGACAGCGCAG
AGAGCCATGCATGGTAGGTAGCTCCAGCGTGAGTTGCTTTGCACCACAGC
TAGTGACAACCTGGTTCTACTTCAGGACACCTGACGGTCTTCACATAACT
TCTCCCTCCCTCTTCGACCTCCTGTTTTTTCGCCTTTCCCGCGGAGTTGT
CCCAAAGGAAAGCCCTTGGCATCTTATACTCCCCACTGCCAAAGAGTACC
AACTTCACAAAGTTCTAGGTTTCTAGTTCGCTTTCCTCTGGGATCTCTGC
CCACGAGTACAGCTCTGGCCAGGAGGCTCCCAGCGACCCAGGGAAGCCAG
GGAGAGCAGGCGACCCTTGTATTCAGTTCCACACAGGTTCCTCGCAAATG
CACACGGTGCTTGGCGGGGGGTATGCGGGAGAGCTTCTGGAGACCAAGGG
GACTCGGGTCCGGCCCTCCCCCCACTCCTAGCCGGGCCTTATGCTACGGG
TGTAGACGCATCGCCCCTACCGCCGGCTTTTCCACCGCCTCCATCTCCTC
CTCTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCAGAAAATCGCCCTTGGCTGACCATCTCCATGATCC
CATCTTTATGAGCTCTCCTGTGTGATCCCTGGTACCTGCAGACAGTTCAC
TCCTCTTGTCTACTCCTGCTTTGGATGCTCTGTTCATGTGCCCCTCCCAT
CTCTACCAGTTGCTTTCTTTAGTTACATCAGCTTTTCCATGATCTCAGCA
GTCGGGGGGAGAGCCTGTGTCAGTCATGCACAGTGGAAAGCTGGGTGTGC
TCAGAGGATGTGCACTTTTTTTTGCCAGCTCTCCACACCATGACAGCACT
GGAAGCTTGCTTTACCGTCTACCTTTAGCAGAGGTTCTTGAGTTCTTAGA
GAGTGGAGGTAGCCCTGTCTTGCTCCGGCCCTGTTCGCTCTGGCACAAAG
GTTTTTATTTGTTTCTCACTACAGAACGTTGTGAGCCACCATGTGTATGC
TGGGATTTGAACTCATGACCTCCGGAAGAGCATTCAGTGCGCTTAACCAC
TGAGCCATCTCACCAGTCTTCTTTTGAGTTTTTATTGAACATCTTTCTTT
TCTGTCCCCAAGTTCTTGGTTTCTGGACACTGCCTTAAACATTCTTGTCT
CTCTCTCCCCAGTATTACCACATAACCAACATTTTGATGATCTATGACCT
TGTTTAAAAAAACTCTTTCAAATTTTACAAGTTCTCTATCACTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i15.b1 MSMg01no495_i15.b1 CHROMAT_FILE:
MSMg01no495_i15.b1 PHD_FILE: MSMg01no495_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:38 2005
         (556 letters)



>mm_chr10_69707012_69707967
          Length = 956

 Score =  994 bits (514), Expect = 0.0
 Identities = 545/562 (96%), Gaps = 12/562 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggcagagggtgagcacacgccacattgcagacatatccctggagcgaacggtgtccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggcagagggtgagcacacgccacattgcagacatatccctggagcgaacggtgtccaca 260

                                                                       
Query: 61  cattcgttagcccctggaaccctaaagttttctgcagtgggcttcggtgacagcgcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcgttagcccctggaaccctaaagttttctgcagtgggcttcggtgacagcgcagag 320

                                                                       
Query: 121 agccatgcatggtaggtagctccagcgtgagttgctttgcaccacagctagtgacaacct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agccatgcatggtaggtagctccagcgtgagttgctttgcaccacagctagtgacagcct 380

                                                                       
Query: 181 ggttctacttcaggacacctgacggtcttcacataacttctccctccctcttcgacctcc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggttctacttcaagacacctgacggtcttcacataacttctccctccctcttcgacctcc 440

                                                                       
Query: 241 tgtttttt------cgcctttcccgcggagttgtcccaaaggaaagcccttggcatctta 294
           ||            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tg------gacacccgcctttcccgcggagttgtcccaaaggaaagcccttggcatctta 494

                                                                       
Query: 295 tactccccactgccaaagagtaccaacttcacaaagttctaggtttctagttcgctttcc 354
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tactccctactgccaaagagtaccaacttcacaaagttctaggtttctagttcgctttcc 554

                                                                       
Query: 355 tctgggatctctgcccacgagtacagctctggccaggaggctcccagcgacccagggaag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctgggatctctgcccacgagtacagctctggccaggaggctcccagcgacccagggaag 614

                                                                       
Query: 415 ccagggagagcaggcgacccttgtattcagttccacacaggttcctcgcaaatgcacacg 474
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 615 ccagggagagcaggcgacccttgtattcagttccacacaggctcctcgcaaatgcacacg 674

                                                                       
Query: 475 gtgcttggcggggggtatgcgggagagcttctggagaccaaggggactcgggtccggccc 534
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 675 gtgcttggcggggggtatgcgggagagcttcgggagaccaaggggactcgggtccggccc 734

                                 
Query: 535 tccccccactcctagccgggcc 556
           ||||||||||||||||||||||
Sbjct: 735 tccccccactcctagccgggcc 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)