BAC Information

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BAC

Clone NameMSMg01-495P08
Chromosome10 (Build37)
Map Location 65,681,669 - 65,681,833
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495P08.T7 (MSMg01no495_p08.b1)MSMg01-495P08.TJ (MSMg01no495_p08.g1)
ACCAG572879AG572880
length957745
length of high quality
(start - end)
---165 (82 - 246)
definitionCHROMAT_FILE: MSMg01no495_p08.b1 PHD_FILE: MSMg01no495_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005CHROMAT_FILE: MSMg01no495_p08.g1 PHD_FILE: MSMg01no495_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGGGAAAAAAGAGAGAAGACACGNAAAAAAAACAAAGAAAAAGAGAGA
GAGGGGGGGNGAAAAAGGGAGGGCCCTTCCTCAACTGCCCACCCCACGCC
NGGGGGNNNGNGGNNNNNNNNNNNNNNNNTTTNNTTNNTTCCCCTCCAAA
AGGGAAGAAGAGAANAGGGGGGGGGGGNNNNGNNGNNNNNNNNNNNNNGG
GGGGGGGGGGGGGGGNNNNNNNGNGGCCGGGGGCGGCGCGGGNGNGGNGN
GGGGGGGNGCGCGNNGCGCGGTTTTTGGGGCGCCGCCCCCCCCGGGCCCA
ACACAAACAAAACACGAAACAAAACNACCCAAGATCCACCACAAATAGCC
CATTAACGACCACACATACGACCCAGAGGAGCAAGAGCGCTTACCCGGCA
AACGACGAAAGAAAGCAACAGCCGCAAAAACAACACCCCCCCAAATCACG
AGCACCAAAACAAAAGAACAAACCGCCCACGAGCCGCCATAAGGACAACC
CCAACCACGACACCCCCGCAAGCGCCCCACACCACACCCAAGAAAAGACC
AACGCGAACCCGCCGCAACAAAGCCGCCGCACACACCAAACAACACCACA
ACCGCCACGCCCGAAAGCGACAAAAGCCTACAAAACCCACACGCACACCA
CCCACCATAACACACCACCACGCACCCACCTATCAAACGACCAGCACAGC
ATCAAAGAACCAAACCCATCACCAAATCAGCACCACCGCCACCGCCACCA
CACAACCACCACACCAACGCACACATCCCCACACACCGCGGCACCGACAA
CAACGACAACAAAACCACGATGAACAAACCAAACACCGCCACGACACACG
ACACCACACAACAAAACAACACAAAACACCACAACAACACCAACACGCGA
AACAAAATAGAAAAAACACACACGAGACACCAACAAACACACCGAGAACG
ACACCAN
NGGCCCTATGCAGAGGGAGGCCGGGNGGNCGCCCGTAANTCATTTGGAGG
NGNAANCCCCATTGATACAGTGAGCCTAGNCCACCACAGGGCTTTTATTG
GGTTGGAAACATCATATGCAAACATAAAAATATTATCTCCTAGAGAACTT
AGGATCACTGAAGATGAGAAATACGTAAGCTACAGATCCTAATGGGAAGG
TGATAAAATTCCCACTTTTTACAAGGTGGTCCAGGAAGGCATTTTTGATT
TTTTTGTGTTAAGAGTGGGAGGTATCCAAGCTGTGTGTTGCTGCACTGAT
TTTTTAGCACACATTTTGTTCCTTTANAACGCNCCCATATATTTTGATTT
ACAGCTCGATTTCTAAGTCATTTTACAGGAATTTGTGTACTGGAGGAATT
TATCTTACATGAAACACCCCCCAATATCTAATAACAGAAAATGCCACATA
TAAGTATCAAGAACGGCCACAGTCTACAGGAAAAGTCAATGCACTAAACT
GAAGAGTAAAGGCATATTACAAACCATTGGCATTACAAGCATTTTGACCA
GATGAAGGAAAGCCAGTCTCCAACATTCTAGTGTATTACTCTGCATCAGT
GGTTTTCAAGCTAACAAAAGCTGTGACTCTTTAACACATACATGTTGTGG
TGTTCTATAACCATAAAATTATTTAGATACTACTTCACAATTGTAATTTT
GCTACTGTTAATGAATTGTAGTATACATATCTGCTACACAGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_p08.g1 MSMg01no495_p08.g1 CHROMAT_FILE:
MSMg01no495_p08.g1 PHD_FILE: MSMg01no495_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:08 2005
         (165 letters)



>mm_chr10_65681469_65682033
          Length = 565

 Score =  288 bits (149), Expect = 1e-82
 Identities = 161/165 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccacagggcttttattgggttggaaacatcatatgcaaacataaaaatattatctcct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 365 caccacagggcttttattgggttggaaacatcataagcaaacataaaaatattatctcct 306

                                                                       
Query: 61  agagaacttaggatcactgaagatgagaaatacgtaagctacagatcctaatgggaaggt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 305 agagaacttaagatcactgaagatgagaaatacgtaagctacagatcctaatgagaaggt 246

                                                        
Query: 121 gataaaattcccactttttacaaggtggtccaggaaggcattttt 165
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 245 gataaaatttccactttttacaaggtggtccaggaaggcattttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)