BAC Information

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BAC

Clone NameMSMg01-496F16
Chromosome10 (Build37)
Map Location 36,861,655 - 36,862,174
singlet/doubletsinglet
Overlap geneLOC100040846
Upstream geneHs3st5, Hdac2, Marcks
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F16.T7 (MSMg01no496_f16.b1)MSMg01-496F16.TJ (MSMg01no496_f16.g1)
ACCAG573180AG573181
length786801
length of high quality
(start - end)		605 (48 - 652)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no496_f16.b1 PHD_FILE: MSMg01no496_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:39 2005CHROMAT_FILE: MSMg01no496_f16.g1 PHD_FILE: MSMg01no496_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCTTCTTCCCAGATGTCCCACCACCTATTTCCTGCCTAAGC
CATTGGCCATTGGCTTTTTAATTGACAGGTGGTGTATCCATACAATACAC
AAGATATTCTCTCTGCAATCAGGTGCCTATTACTCTCTCACTAAACCTAG
AGCTAGACTGTCGGCCAATAAGGCTCAAAGATCTTCCCCCAGCACTGGGC
TTGCTCACACACCTGGGCTGGCTTTTTACACAGGTGCTGTGGATTTGAAC
TCAGGTCCTCATGCTTGCATGGCAAGTGCTCTTCTGCCCTAAACTGACAT
TTTAAACCATCCTGACCTCTGATTTCTTCTGTGGTGCATCTTAGATGCAT
TGGTGGTAATCTGTATAGGAAGACCGTATACAGATTACTACATCATATTA
CATTAAATTTTTGTGTAGTGTATGCCAGGGGTGAGGGTCGGTCGGGGAAC
CTTTTCAAGAGTTGGTTCTATCTACACACCATCTGGGTCTTGGGATGATG
GATTTAGGTTTTCAGACTTGAACGCAAGCACCTTTAGCTATGGTGCCACC
AGGTCAGAATAAATGGGAGCACAGAGCTGGCAGTAATAGCACACCCCTGT
TAGTCGCTAGCAGTTGAGAAGTAGACCCTGTGAATCATGAGTTTTAGACT
AGTCTGGGCTCCAAAGGGTTGGAGGTCAGCCTGTATTGCGCAATAAGACT
CTGTACACTCATACACACACATCCCTCCATAACAGN

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCACAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAACTCTAGAAAATGAAGACTGAGTGTGGACACTATGCCC
CTCCNTAAAAGTGGAACAAACACCCTTGTAAGGAGTACAGAGACAAGTTG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f16.b1 MSMg01no496_f16.b1 CHROMAT_FILE:
MSMg01no496_f16.b1 PHD_FILE: MSMg01no496_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:39 2005
         (605 letters)



>mm_chr10_36861170_36862174
          Length = 1005

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Minus

                                                                        
Query: 86   tgtatccatacaatacacaagatattctctctgcaatcaggtgcctattactctctcact 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 tgtatccatacaatacacaagatattctctctgcaatcaggtgcctattactctctcact 946

                                                                        
Query: 146  aaacctagagctagactgtcggccaataaggctcaaagatcttcccccagcactgggctt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  aaacctagagctagactgtcggccaataaggctcaaagatcttcccccagcactgggctt 886

                                                                        
Query: 206  gctcacacacctgggctggctttttacacaggtgctgtggatttgaactcaggtcctcat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  gctcacacacctgggctggctttttacacaggtgctgtggatttgaactcaggtcctcat 826

                                                                        
Query: 266  gcttgcatggcaagtgctcttctgccctaaactgacattttaaaccatcctgacctctga 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  gcttgcatggcaagtgctcttctgccctaaactgacattttaaaccatcctgacctctga 766

                                                                        
Query: 326  tttcttctgtggtgcatcttagatgcattggtggtaatctgtataggaagaccgtataca 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  tttcttctgtggtgcatcttagatgcattggtggtaatctgtataggaagaccgtataca 706

                                                                        
Query: 386  gattactacatcatattacattaaatttttgtgtagtgtatgccaggggtgagggtcggt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  gattactacatcatattacattaaatttttgtgtagtgtatgccaggggtgagggtcggt 646

                                                                        
Query: 446  cggggaaccttttcaagagttggttctatctacacaccatctgggtcttgggatgatgga 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  cggggaaccttttcaagagttggttctatctacacaccatctgggtcttgggatgatgga 586

                                                                        
Query: 506  tttaggttttcagacttgaacgcaagcacctttagctatggtgccaccaggtcagaataa 565
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 585  tttaggttttcagacttgaatgcaagcacctttagctatggtgccaccaggtcagaataa 526

                                                    
Query: 566  atgggagcacagagctggcagtaatagcacacccctgtta 605
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  atgggagcacagagctggcagtaatagcacacccctgtta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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