BAC Information

Click to search

BAC

Clone NameMSMg01-496K09
Chromosome10 (Build37)
Map Location 32,843,636 - 32,844,025
singlet/doubletsinglet
Overlap geneTrdn
Upstream geneTcba1, EG667761
Downstream geneA330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496K09.T7 (MSMg01no496_k09.b1)MSMg01-496K09.TJ (MSMg01no496_k09.g1)
ACCAG573404AG573405
length926757
length of high quality
(start - end)
---391 (332 - 722)
definitionCHROMAT_FILE: MSMg01no496_k09.b1 PHD_FILE: MSMg01no496_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:03 2005CHROMAT_FILE: MSMg01no496_k09.g1 PHD_FILE: MSMg01no496_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCGCAAAAAGAAAATAGGGGGGAAGCGTTTTCTTCCCAAAGAGGGGG
GGAGGTGGGGGTTTTTCCCAGAAGGAGAGCCATACAATAGACCAAGCCGG
CTGCCTGCCCGAGCTAGTCTGTCCGCTGCGCGTTTTTCGGTTCGCGCGGG
CGTCCCCGCTTATTCCATAAAACGCCAGCCTCGCCTCATATTCCTGTACC
AAAAAGATAATACGCGCCTCGTCATAGCCTTGCTTTTTGCCACTCTTGCC
CTACTGCTGCCGCCGCACCACAAGTAGCAGAGAAAGAAAGTGTGTCCTAT
ATTCAAGGAACTACGAAAACGGTTAATCGAAACATCGCAGCCCCTATTGC
CCCGGCAGGACAACAGGCCCCGGGCCGCGTCAAAAAGTGCAATATCAATA
GATATCGGCCAATAGGGTTGTTGTTACAAAGGGGCCCCCACTCGCCGGCA
CCTTCGCGTGTATCCGCGAGGCGGTGATGGTGAGTGAGGTAGCCGTGGCT
TCCCCCTGAAAACAGTTTGTACCGGCACGGAAAAAATGTGACAAGCGGGC
GGTGCGGATCATATTGATAACAAGGAAAGCAATAACGTAGGACACATATA
TTTACCCCCGTACCAACCACCAATAGGACATAACAACACTAATTGGGGGG
CGGCAGACGGTATAATAGGTATAAAGGGGTGAGGTTCTCCCCCCCGTCAC
GAATAAGCAACGCAACGCAATATCAAGGTCGGCGCAAACCGTTACCCCGC
GCCGTATTATATAGTGCCCCACCGCCCGGCGTTCCGTATATACCACCGCG
CCATATAATCACTCGAACTGGTATGTAGGCGGGGGGTCGGACACACATGT
ACGTGTGAGAGGACTGGCATACATCCACTTATTTTAACGCCCTCTTTATT
AGACCTCCATCCCGGGTATATCCTTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTACCAAAAAAAATGCATTTAACTCATTTTTGTCTAG
TACTCTCTGTGAGACACACTTAACAATTTATTTATATTAATGAATAAGCC
TTTGCAAAAGATCTGTGAGACTTAATGTAATCAAATTTAAATATTAAAGA
CACTATAATTTTCATAGTAATTTTAATTAAAATTAGGTGTTAAATGTTTT
ATATTTTCCTAGCCATGCAGGCAAAATACAATTTCATAATTTTAGATAAT
AAAATTTCTACCACTGGGGCTGTGATAATGGCTCAGTGGTTAAGAACCCT
GACTGCTGTTCCAGAGGTCCTGAGTTCAAGTCCCAGAAATCACATGGTGG
CTCACAGCTATCTGTAATGAGATCCTATGCCCTCTTCTGGAGTGTCTGAA
GACAGCTACTGTGTACTTATTAAAATAAATAAATCTTAAAAAACAAAACA
AAACAAAACTTTTTTCTACCAGTGGAAAATTAAGTAATATGGCCCACAGT
TAACCAATGATGAAAAATAATCTCAAATATCTATGAATACTATCTAAAGA
CCCATTCCTGCTTGCAAAAAATTACTGTAGAGAGAATCTTTATGTACTGT
GTAGAAGCATCACCTGTCAATAATAAGCTTTTGGCGTCTGAGCTGAGGCA
TGATTAGAAATTGAAACATTCTCCCCAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_k09.g1 MSMg01no496_k09.g1 CHROMAT_FILE:
MSMg01no496_k09.g1 PHD_FILE: MSMg01no496_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:03 2005
         (391 letters)



>mm_chr10_32843354_32844144
          Length = 791

 Score =  708 bits (366), Expect = 0.0
 Identities = 384/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagtggttaagaaccctgactgctgttccagaggtcctgagttcaagtcccagaaatc 60
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 672 ctcagtggttaagaaccctgactgatgttccagaggtcctgagttcaattcccagaaatc 613

                                                                       
Query: 61  acatggtggctcacagctatctgtaatgagatcctatgccctcttctggagtgtctgaag 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 612 acatggtggctcacagctatctgtaatgggatcctatgccctcttctggagtgtctgaag 553

                                                                       
Query: 121 acagctactgtgtacttattaaaataaataaatcttaaaaaacaaaacaaaacaaaactt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 552 acagctactgtgtacttattaaaataaataaatcttaaaacacaaaacaaaacaaaactt 493

                                                                       
Query: 181 ttttctaccagtggaaaattaagtaatatggcccacagttaaccaatgatgaaaaataat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttttctaccagtggaaaattaagtaatatggcccacagttaaccaatgatgaaaaataat 433

                                                                       
Query: 241 ctcaaatatctatgaatactatctaaagacccattcctgcttgcaaaaaattactgtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctcaaatatctatgaatactatctaaagacccattcctgcttgcaaaaaattactgtaga 373

                                                                       
Query: 301 gagaatctttatgtactgtgtagaagcatcacctgtcaataataagcttttggcgtctga 360
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 372 gagaatctttatgtactgtgtagaagcatcacctgtcaataaaaagctgttggcgtctga 313

                                         
Query: 361 gctgaggcatgattagaaattgaaacattc 390
           ||||||||||||||||||||||||||||||
Sbjct: 312 gctgaggcatgattagaaattgaaacattc 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)