BAC Information

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BAC

Clone NameMSMg01-497A10
Chromosome10 (Build37)
Map Location 98,751,991 - 98,752,592
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
Downstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497A10.T7 (MSMg01no497_a10.b1)MSMg01-497A10.TJ (MSMg01no497_a10.g1)
ACCAG573692AG573693
length7591,441
length of high quality
(start - end)
605 (53 - 657)---
definitionCHROMAT_FILE: MSMg01no497_a10.b1 PHD_FILE: MSMg01no497_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:34 2005CHROMAT_FILE: MSMg01no497_a10.g1 PHD_FILE: MSMg01no497_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTAATTTCTTTTGAGATCACAACCCAGATACCCGGAG
TCTAATCTCCCCAGGCCTCATTCCGGCCCTCGCCCTCTTCCTCTTCCTCC
ATACAGAAGATTACAGCACCAGGCAGGTGGGATTGCCAAGGGCCAACTGG
TTTTCCTTGGACCAGTGGGATGATCAGGCTGGAATGTGTCCAACCCTTAA
GGCTGCCTGTTGTGTGGGTTGGGCCTGGGGGAGGAAGTAGGGAGGAAGGA
AGAAGGAAGGGTTATCCCCATGTCTTCAGGATTCAGTGCAAAACTCCAAT
GACCTTGTTACTAAGAAGACATAGTTGTTAGAGTGGTCACTTCTTATGTA
ACTTTCCTTTATTTATTCATTTGCTATATGGGCCTGCGTTTTATTCTGCC
ACGGACCTGCCCCCAAGTGAATTCCTTCTTAAGGTGAAAGGCTTAGGCAA
TGGGTGATGAGATTCTCAGATAGAGGTTGCATGACTACTGTTATTGTCTT
TAGCAGTTATGTAGGAGACCCTTAAGGCCTAGGAGAGTGAGGAATCCTTT
TGCTTAAATGCCATCTTAATTGCTTCTCATTTTGTGAACGGGCGTAGTTG
TTTTTAGCACAAGAATAAAAATACCTTAGTGTTTTCAACATTATTTGTCC
CTTTGTCCATCANGATGGACAGACCAGAATTACTGGTTTAGCCGAGTGTC
TTATTTTCT
NAAAANGGGCGCGAGTGTGCGGAGGGCGCGCGCGAGTGTCGTGGCGCGTG
GCGCGGCGCGCGTTATTTTCTCTTTACTATAGAGAGAGGACGACGAGCAC
AGTANGGAGTTGTATTCTCCGCAGAGTAGAGGTGCCAAGGGAGATTAGTA
GTAATATATACATCGCTCGCGATCGATCGCATAACACGCGCATATGTANG
AGTATTGTGTCGNCNCGAGGTCACGCGGATTGTGGCGTGGGTACGCGGAG
ACGGAGTAGTCGGAGTGACATGTATACGTCGCGTGAGCCAATGACCCTCT
CACACTGTGCAAATGATAGCCGACCTCATACGTGATAGCCGCCACATATC
CGTGTGCTCGTGGTGCGTGAGTATCTCTGTGAGGAAGGGCGAGGCCAAGA
GTAGAGAACAACCCCNCAAGACACTTCGTCCGTGGTTAGTTTATCTATGC
GCTTATTGCAATAACACGACTTAGCACATTAACGAGAAGTACGAAGCAAC
AATCCACTAATAATACGAGCAGAANCNCTCGTATTAAAGATTAGTAAGTA
ATGATATAGATCTCTAACATGTATACCGGCCTACTCGGCTAGAGCTATTT
CTCTCACTATAGTGAATGGTATGGTNTTACTATGTGCGTCGTAGCGNCGG
CTAGTAGATGTATATGTACATGTGCAAGGTAGCTAGTAGTTATAAGGCGA
CGCTCTATGGTAGTAGGAATTGATGTTCTCTCTGATATATCCGAATTGTT
ATGTGGTGCNCTGTCCTCTCAATCATTTGTGTATACGCTCTAANCGCGTG
GACTCCGCTAATCTGTAGGAGGCACGTGTTCGGTGCACGCAGCTGTTTGG
TGATGTTGATTGTTTGTTGTCGCACGCCTGACGTTGTGGTCAGCGCTTTA
CTGAGTTGTATGTCCACTCTGTTTATACTTATGGTTCATAGAGATGTGAG
TAGGGAGNTAGTGGGCGCATCTGTGATTAGATACCCTGCCACCCATCGTT
GTCATAATGCGCACTGTGTAGATCGACCGTGTACGCATATTGATTTATAT
ATAAATGTGGTGAAAGAGAGCAGAGTTATATGGAATCTGTTGACGACAGA
CATAATANAANAGGNCGCGGACGCGNTGCGAGTGTGAGTGAGATGTAGTA
TCTGCATGNCNCCAACACATGAGAGCGAGAGCACAGGTAGGTGATGAATG
ATGAGAAGAATGANAACGGGACTTGTTAGGCGGCGCTCTATGCGCTCGTC
ACGGTCGAGTGCGTCGTCGACGTCTGATAGAAAACGTGGTCTCACATCAC
GGCTACTGATATCTCTTTAGCACGTCTTGAGAGTCGCCACCGCGCATGGA
GATATCTCGCGCCTGCTCGTANTAAGCGTCCACTGTGATGTATACTATTT
GTGTGCTCGATGAATGCTGATCGATAGTATACCAGCACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_a10.b1 MSMg01no497_a10.b1 CHROMAT_FILE:
MSMg01no497_a10.b1 PHD_FILE: MSMg01no497_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:34 2005
         (605 letters)



>mm_chr10_98751788_98752792
          Length = 1005

 Score = 1149 bits (594), Expect = 0.0
 Identities = 600/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaatttcttttgagatcacaacccagatacccggagtctaatctccccagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctaatttcttttgagatcacaacccagatacccggagtctaatctccccagg 263

                                                                       
Query: 64  cctcattccggccctcgccctcttcctcttcctccatacagaagattacagcaccaggca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcattccggccctcgccctcttcctcttcctccatacagaagattacagcaccaggca 323

                                                                       
Query: 124 ggtgggattgccaagggccaactggttttccttggaccagtgggatgatcaggctggaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtgggattgccaagggccaactggttttccttggaccagtgggatgatcaggctggaat 383

                                                                       
Query: 184 gtgtccaacccttaaggctgcctgttgtgtgggttgggcctgggggaggaagtagggagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgtccaacccttaaggctgcctgttgtgtgggttgggcctgggggaggaagtagggagg 443

                                                                       
Query: 244 aaggaagaaggaagggttatccccatgtcttcaggattcagtgcaaaactccaatgacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaggaagaaggaagggttatccccatgtcttcaggattcagtgcaaaactccaatgacct 503

                                                                       
Query: 304 tgttactaagaagacatagttgttagagtggtcacttcttatgtaactttcctttattta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgttactaagaagacatagttgttagagtggtcacttcttatgtaactttcctttattta 563

                                                                       
Query: 364 ttcatttgctatatgggcctgcgttttattctgccacggacctgcccccaagtgaattcc 423
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 ttcatttgctatatgggcctacgttttattctgccatggacctgcccccaagtgaattcc 623

                                                                       
Query: 424 ttcttaaggtgaaaggcttaggcaatgggtgatgagattctcagatagaggttgcatgac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcttaaggtgaaaggcttaggcaatgggtgatgagattctcagatagaggttgcatgac 683

                                                                       
Query: 484 tactgttattgtctttagcagttatgtaggagacccttaaggcctaggagagtgaggaat 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tactgttattgtctttagcagttatgtaggagacccttaaggcctaggagagtgaggaat 743

                                                                       
Query: 544 ccttttgcttaaatgccatcttaattgcttctcattttgtgaacgggcgtagttgttttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccttttgcttaaatgccatcttaattgcttctcattttgtgaacgggcgtagttgttttt 803

             
Query: 604 ag 605
           ||
Sbjct: 804 ag 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)